miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 53206 0.69 0.811622
Target:  5'- gGGGGGCGGCGugccaAACUCCGCGggCCu--- -3'
miRNA:   3'- -CUCCUGCCGU-----UUGAGGUGCa-GGuccg -5'
29131 3' -55.7 NC_006146.1 + 54038 0.71 0.69826
Target:  5'- gGAGGGCGGCcAugUCgGCGguggUCAGGg -3'
miRNA:   3'- -CUCCUGCCGuUugAGgUGCa---GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 54709 0.8 0.259881
Target:  5'- aGGGGACGGCGGGC-CCGgGUCaGGGCg -3'
miRNA:   3'- -CUCCUGCCGUUUGaGGUgCAGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54924 0.68 0.874637
Target:  5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3'
miRNA:   3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 55169 0.67 0.889265
Target:  5'- cAGGGgGGUGA---CCGCGUCCcAGGCu -3'
miRNA:   3'- cUCCUgCCGUUugaGGUGCAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 57072 0.67 0.88242
Target:  5'- gGAGGAagaCGGCGuaguccacgAGCggCGCGUCCuGGCc -3'
miRNA:   3'- -CUCCU---GCCGU---------UUGagGUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 57822 0.72 0.647805
Target:  5'- cGAGGcCGGguG-CUCCAaccUCCAGGCa -3'
miRNA:   3'- -CUCCuGCCguUuGAGGUgc-AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 57946 0.66 0.930764
Target:  5'- gGAGGucuucuCGGaCAAGUUCUACGacgaggaguucuUCCAGGCg -3'
miRNA:   3'- -CUCCu-----GCC-GUUUGAGGUGC------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 59599 0.67 0.90228
Target:  5'- gGAGGGCGGCGucccccgucAGgUCCuuGaggaaaaagugcUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGU---------UUgAGGugC------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 59805 0.66 0.94051
Target:  5'- aGAGGAUcugauGCAGAUgUCGCGggaCCGGGCa -3'
miRNA:   3'- -CUCCUGc----CGUUUGaGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 60599 0.68 0.84501
Target:  5'- cAGGGCGGCGAugaacGC-CUACGcCgAGGCc -3'
miRNA:   3'- cUCCUGCCGUU-----UGaGGUGCaGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 62424 0.67 0.88242
Target:  5'- cGGGugGGCuGGCUgaaGCGgccUCCGGGCu -3'
miRNA:   3'- cUCCugCCGuUUGAgg-UGC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 64250 0.67 0.895886
Target:  5'- aGAGGACGGCccuGACcagccggCCGCag-CAGGCg -3'
miRNA:   3'- -CUCCUGCCGu--UUGa------GGUGcagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 65053 0.69 0.793932
Target:  5'- cGAGGAgCGGCAcugcgucuACUCgGCGgcgCgGGGCa -3'
miRNA:   3'- -CUCCU-GCCGUu-------UGAGgUGCa--GgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 65453 0.66 0.925537
Target:  5'- gGAGGugGGCAcga-CCACGcuggCGGGCu -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGCag--GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 66340 0.66 0.925537
Target:  5'- uGGGAgcUGGCcAGC-CCACGUgCAGGg -3'
miRNA:   3'- cUCCU--GCCGuUUGaGGUGCAgGUCCg -5'
29131 3' -55.7 NC_006146.1 + 67259 0.67 0.889265
Target:  5'- gGGGGAUaGGCGGGCcccuccUCCGCGUgCCAGcuuGCg -3'
miRNA:   3'- -CUCCUG-CCGUUUG------AGGUGCA-GGUC---CG- -5'
29131 3' -55.7 NC_006146.1 + 68345 0.66 0.920075
Target:  5'- cGAGGACGGC---CUCCGCcguGUCaguguugguGGCa -3'
miRNA:   3'- -CUCCUGCCGuuuGAGGUG---CAGgu-------CCG- -5'
29131 3' -55.7 NC_006146.1 + 69582 0.69 0.793932
Target:  5'- gGGGGAagaUGGCcAGgUCCuggggcagcgagACGUCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuUUgAGG------------UGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 69976 0.66 0.930764
Target:  5'- uGAGGAUGGCcaaGAACagCACGgUCGGGg -3'
miRNA:   3'- -CUCCUGCCG---UUUGagGUGCaGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.