Results 81 - 100 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 22504 | 0.73 | 0.604125 |
Target: 5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3' miRNA: 3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 13270 | 0.73 | 0.604125 |
Target: 5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3' miRNA: 3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 39897 | 0.67 | 0.895886 |
Target: 5'- -cGGcUGGCuuuugAGAUugUCCACGUCCAGGg -3' miRNA: 3'- cuCCuGCCG-----UUUG--AGGUGCAGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 156338 | 0.67 | 0.900386 |
Target: 5'- uGGGGcucacgccccgaaaGCGGCccagcAGCUCCAgggcccgGUCCAGGCu -3' miRNA: 3'- -CUCC--------------UGCCGu----UUGAGGUg------CAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 50067 | 0.67 | 0.908445 |
Target: 5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3' miRNA: 3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 4315 | 0.68 | 0.836931 |
Target: 5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3' miRNA: 3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34420 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 41758 | 0.68 | 0.868077 |
Target: 5'- cGGGugGGCuucccgccggAGGCcCUGCGcCCGGGCg -3' miRNA: 3'- cUCCugCCG----------UUUGaGGUGCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34327 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34234 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34141 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 30145 | 0.68 | 0.875356 |
Target: 5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3' miRNA: 3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 62424 | 0.67 | 0.88242 |
Target: 5'- cGGGugGGCuGGCUgaaGCGgccUCCGGGCu -3' miRNA: 3'- cUCCugCCGuUUGAgg-UGC---AGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 73052 | 0.68 | 0.86059 |
Target: 5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3' miRNA: 3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33770 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33863 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33955 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 34048 | 0.69 | 0.811622 |
Target: 5'- aGGGGcaccCGGCccccggccccGAGCUCCAgGaCCGGGCa -3' miRNA: 3'- -CUCCu---GCCG----------UUUGAGGUgCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 122772 | 0.66 | 0.92338 |
Target: 5'- cGGGGGCuGGcCGAACUCCAagagaagagaCGGGCg -3' miRNA: 3'- -CUCCUG-CC-GUUUGAGGUgcag------GUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 153656 | 0.66 | 0.925537 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCUuacaugggagUCAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUGA----------GGUGCa----GGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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