miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 156338 0.67 0.900386
Target:  5'- uGGGGcucacgccccgaaaGCGGCccagcAGCUCCAgggcccgGUCCAGGCu -3'
miRNA:   3'- -CUCC--------------UGCCGu----UUGAGGUg------CAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 50422 0.72 0.657954
Target:  5'- aGGGACGGCAggcaggccgcaAGCUUCGCGgCCAGauGCa -3'
miRNA:   3'- cUCCUGCCGU-----------UUGAGGUGCaGGUC--CG- -5'
29131 3' -55.7 NC_006146.1 + 145006 0.68 0.852899
Target:  5'- aAGGugGGCAGGgaggagcuCUCCACcacaauGUucCCGGGCa -3'
miRNA:   3'- cUCCugCCGUUU--------GAGGUG------CA--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 156927 0.68 0.86361
Target:  5'- uGGGuGGCGGCGcugacgGGCUCCGCuacgcugauaaaguuGUCCuGGGCu -3'
miRNA:   3'- -CUC-CUGCCGU------UUGAGGUG---------------CAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 151457 0.68 0.868077
Target:  5'- cAGGACGaaGCGGcGCgCCGCGUCCAcguuGGCu -3'
miRNA:   3'- cUCCUGC--CGUU-UGaGGUGCAGGU----CCG- -5'
29131 3' -55.7 NC_006146.1 + 28660 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 47712 0.7 0.737689
Target:  5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3'
miRNA:   3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 53206 0.69 0.811622
Target:  5'- gGGGGGCGGCGugccaAACUCCGCGggCCu--- -3'
miRNA:   3'- -CUCCUGCCGU-----UUGAGGUGCa-GGuccg -5'
29131 3' -55.7 NC_006146.1 + 42724 0.68 0.84501
Target:  5'- -cGGGCuGGCAg---CCGCGgaUCCGGGCg -3'
miRNA:   3'- cuCCUG-CCGUuugaGGUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 137996 0.7 0.751176
Target:  5'- cGGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3'
miRNA:   3'- -CUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16348 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 50067 0.67 0.908445
Target:  5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3'
miRNA:   3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 65453 0.66 0.925537
Target:  5'- gGAGGugGGCAcga-CCACGcuggCGGGCu -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGCag--GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 28791 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 57946 0.66 0.930764
Target:  5'- gGAGGucuucuCGGaCAAGUUCUACGacgaggaguucuUCCAGGCg -3'
miRNA:   3'- -CUCCu-----GCC-GUUUGAGGUGC------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 41400 0.66 0.925537
Target:  5'- uGAGGugGGCcuGAugUCCGCcugggGGGCa -3'
miRNA:   3'- -CUCCugCCG--UUugAGGUGcagg-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 81822 0.67 0.898471
Target:  5'- uGAGGAgccguggcccaacacCaGCAGGCUCCAUacCCGGGCu -3'
miRNA:   3'- -CUCCU---------------GcCGUUUGAGGUGcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 168108 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 169972 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.