miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 126013 0.68 0.852899
Target:  5'- uGGGGGCGGUggGCUUCugcugCUGGGCc -3'
miRNA:   3'- -CUCCUGCCGuuUGAGGugca-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 156927 0.68 0.86361
Target:  5'- uGGGuGGCGGCGcugacgGGCUCCGCuacgcugauaaaguuGUCCuGGGCu -3'
miRNA:   3'- -CUC-CUGCCGU------UUGAGGUG---------------CAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 22504 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 93933 0.72 0.627479
Target:  5'- aGGcGGCGGCgGGGCUCCGCucuccGUCcCAGGCg -3'
miRNA:   3'- cUC-CUGCCG-UUUGAGGUG-----CAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 155863 0.72 0.657954
Target:  5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3'
miRNA:   3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 47712 0.7 0.737689
Target:  5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3'
miRNA:   3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 49533 0.7 0.76634
Target:  5'- cGGGGGCuccucugggGGCGGAggCCACGccggCCAGGCc -3'
miRNA:   3'- -CUCCUG---------CCGUUUgaGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 69582 0.69 0.793932
Target:  5'- gGGGGAagaUGGCcAGgUCCuggggcagcgagACGUCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuUUgAGG------------UGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 4315 0.68 0.836931
Target:  5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3'
miRNA:   3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 44777 0.66 0.930764
Target:  5'- -cGGGCGGgGAAC-CCAgG-CCGGGg -3'
miRNA:   3'- cuCCUGCCgUUUGaGGUgCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 22635 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54924 0.68 0.874637
Target:  5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3'
miRNA:   3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 159198 0.68 0.878207
Target:  5'- aGAGGACagaaguugguGGCAAAUaUCUGCGUggauaccguggggggCCAGGCu -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-AGGUGCA---------------GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 81822 0.67 0.898471
Target:  5'- uGAGGAgccguggcccaacacCaGCAGGCUCCAUacCCGGGCu -3'
miRNA:   3'- -CUCCU---------------GcCGUUUGAGGUGcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 98241 0.67 0.907839
Target:  5'- cGGGGugcAgGGCGGACagCACGUCCaacagaaAGGCc -3'
miRNA:   3'- -CUCC---UgCCGUUUGagGUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 98301 0.66 0.913794
Target:  5'- uGGGGCugagGGCGuGCUCCguggccgucuggcACGgggCCGGGCg -3'
miRNA:   3'- cUCCUG----CCGUuUGAGG-------------UGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 169040 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 65453 0.66 0.925537
Target:  5'- gGAGGugGGCAcga-CCACGcuggCGGGCu -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGCag--GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128741 0.66 0.925537
Target:  5'- gGAGGGgGGUGAG-UCCGUG-CCAGGCc -3'
miRNA:   3'- -CUCCUgCCGUUUgAGGUGCaGGUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.