Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 16348 | 0.73 | 0.604125 |
Target: 5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3' miRNA: 3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 33966 | 0.68 | 0.86059 |
Target: 5'- cGGGugGGCGuGgUCCGCuggguccgcugGUCCGGuGCa -3' miRNA: 3'- cUCCugCCGUuUgAGGUG-----------CAGGUC-CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 50067 | 0.67 | 0.908445 |
Target: 5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3' miRNA: 3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 156338 | 0.67 | 0.900386 |
Target: 5'- uGGGGcucacgccccgaaaGCGGCccagcAGCUCCAgggcccgGUCCAGGCu -3' miRNA: 3'- -CUCC--------------UGCCGu----UUGAGGUg------CAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 156729 | 0.68 | 0.85983 |
Target: 5'- cGGGGGuccagccUGGCGcagacgcucAGCUCCACGgCCAGcGCg -3' miRNA: 3'- -CUCCU-------GCCGU---------UUGAGGUGCaGGUC-CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 155863 | 0.72 | 0.657954 |
Target: 5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3' miRNA: 3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 13270 | 0.73 | 0.604125 |
Target: 5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3' miRNA: 3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 102960 | 0.73 | 0.575848 |
Target: 5'- cGAGGGCagccgcccauccgGGaCAuACUCCACGgugggCCGGGCu -3' miRNA: 3'- -CUCCUG-------------CC-GUuUGAGGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 94776 | 0.7 | 0.747342 |
Target: 5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3' miRNA: 3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 4315 | 0.68 | 0.836931 |
Target: 5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3' miRNA: 3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 44248 | 0.69 | 0.802853 |
Target: 5'- -cGGGCGGCGGugUCCAuUGcCCcugcGGGCc -3' miRNA: 3'- cuCCUGCCGUUugAGGU-GCaGG----UCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 48027 | 0.71 | 0.727945 |
Target: 5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3' miRNA: 3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 25582 | 0.73 | 0.604125 |
Target: 5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3' miRNA: 3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 100103 | 0.68 | 0.875356 |
Target: 5'- -cGGACGGUGGACaggagUCUGCGgucCCGGGUu -3' miRNA: 3'- cuCCUGCCGUUUG-----AGGUGCa--GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 54924 | 0.68 | 0.874637 |
Target: 5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3' miRNA: 3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 126013 | 0.68 | 0.852899 |
Target: 5'- uGGGGGCGGUggGCUUCugcugCUGGGCc -3' miRNA: 3'- -CUCCUGCCGuuUGAGGugca-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 64250 | 0.67 | 0.895886 |
Target: 5'- aGAGGACGGCccuGACcagccggCCGCag-CAGGCg -3' miRNA: 3'- -CUCCUGCCGu--UUGa------GGUGcagGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 89697 | 0.66 | 0.94051 |
Target: 5'- cGGGGaACGGCcugGGAUaCaCGgGUCCGGGCc -3' miRNA: 3'- -CUCC-UGCCG---UUUGaG-GUgCAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 116058 | 0.67 | 0.908445 |
Target: 5'- uGGGGAUGGCGcauGACaaauguggCgACGUCCuGGUg -3' miRNA: 3'- -CUCCUGCCGU---UUGa-------GgUGCAGGuCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 67259 | 0.67 | 0.889265 |
Target: 5'- gGGGGAUaGGCGGGCcccuccUCCGCGUgCCAGcuuGCg -3' miRNA: 3'- -CUCCUG-CCGUUUG------AGGUGCA-GGUC---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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