miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 16348 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33966 0.68 0.86059
Target:  5'- cGGGugGGCGuGgUCCGCuggguccgcugGUCCGGuGCa -3'
miRNA:   3'- cUCCugCCGUuUgAGGUG-----------CAGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 50067 0.67 0.908445
Target:  5'- cAGGAa-GCGGACgUCCucuuCGUCCAcGGCg -3'
miRNA:   3'- cUCCUgcCGUUUG-AGGu---GCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 156338 0.67 0.900386
Target:  5'- uGGGGcucacgccccgaaaGCGGCccagcAGCUCCAgggcccgGUCCAGGCu -3'
miRNA:   3'- -CUCC--------------UGCCGu----UUGAGGUg------CAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 156729 0.68 0.85983
Target:  5'- cGGGGGuccagccUGGCGcagacgcucAGCUCCACGgCCAGcGCg -3'
miRNA:   3'- -CUCCU-------GCCGU---------UUGAGGUGCaGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 155863 0.72 0.657954
Target:  5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3'
miRNA:   3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 102960 0.73 0.575848
Target:  5'- cGAGGGCagccgcccauccgGGaCAuACUCCACGgugggCCGGGCu -3'
miRNA:   3'- -CUCCUG-------------CC-GUuUGAGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94776 0.7 0.747342
Target:  5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3'
miRNA:   3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 4315 0.68 0.836931
Target:  5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3'
miRNA:   3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 44248 0.69 0.802853
Target:  5'- -cGGGCGGCGGugUCCAuUGcCCcugcGGGCc -3'
miRNA:   3'- cuCCUGCCGUUugAGGU-GCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 48027 0.71 0.727945
Target:  5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3'
miRNA:   3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 25582 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 100103 0.68 0.875356
Target:  5'- -cGGACGGUGGACaggagUCUGCGgucCCGGGUu -3'
miRNA:   3'- cuCCUGCCGUUUG-----AGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54924 0.68 0.874637
Target:  5'- aGGGAcCGGCAGuaggcCUCgACGUCUgcccgcgGGGCg -3'
miRNA:   3'- cUCCU-GCCGUUu----GAGgUGCAGG-------UCCG- -5'
29131 3' -55.7 NC_006146.1 + 126013 0.68 0.852899
Target:  5'- uGGGGGCGGUggGCUUCugcugCUGGGCc -3'
miRNA:   3'- -CUCCUGCCGuuUGAGGugca-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 64250 0.67 0.895886
Target:  5'- aGAGGACGGCccuGACcagccggCCGCag-CAGGCg -3'
miRNA:   3'- -CUCCUGCCGu--UUGa------GGUGcagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 89697 0.66 0.94051
Target:  5'- cGGGGaACGGCcugGGAUaCaCGgGUCCGGGCc -3'
miRNA:   3'- -CUCC-UGCCG---UUUGaG-GUgCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 116058 0.67 0.908445
Target:  5'- uGGGGAUGGCGcauGACaaauguggCgACGUCCuGGUg -3'
miRNA:   3'- -CUCCUGCCGU---UUGa-------GgUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 67259 0.67 0.889265
Target:  5'- gGGGGAUaGGCGGGCcccuccUCCGCGUgCCAGcuuGCg -3'
miRNA:   3'- -CUCCUG-CCGUUUG------AGGUGCA-GGUC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.