Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 114133 | 0.71 | 0.69826 |
Target: 5'- cGAGGA-GGCcugcgcguGCUCCGCGaUCAGGCc -3' miRNA: 3'- -CUCCUgCCGuu------UGAGGUGCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 54038 | 0.71 | 0.69826 |
Target: 5'- gGAGGGCGGCcAugUCgGCGguggUCAGGg -3' miRNA: 3'- -CUCCUGCCGuUugAGgUGCa---GGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 127156 | 0.71 | 0.71812 |
Target: 5'- -uGGACGGCGucauGCgcgaccaCCugGcCCGGGCg -3' miRNA: 3'- cuCCUGCCGUu---UGa------GGugCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 48027 | 0.71 | 0.727945 |
Target: 5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3' miRNA: 3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 123029 | 0.71 | 0.727945 |
Target: 5'- cGAGGccgaGGC-GGC-CCAgGUCCGGGCg -3' miRNA: 3'- -CUCCug--CCGuUUGaGGUgCAGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 47712 | 0.7 | 0.737689 |
Target: 5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3' miRNA: 3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 130128 | 0.7 | 0.746381 |
Target: 5'- cAGGAUgauggaguucuugGGCAGG-UCCACGUCCGuGGCc -3' miRNA: 3'- cUCCUG-------------CCGUUUgAGGUGCAGGU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 94776 | 0.7 | 0.747342 |
Target: 5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3' miRNA: 3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 137996 | 0.7 | 0.751176 |
Target: 5'- cGGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3' miRNA: 3'- -CUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 49533 | 0.7 | 0.76634 |
Target: 5'- cGGGGGCuccucugggGGCGGAggCCACGccggCCAGGCc -3' miRNA: 3'- -CUCCUG---------CCGUUUgaGGUGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 9461 | 0.7 | 0.775667 |
Target: 5'- -cGGugGGCGcgGGgUCCGCGcCCucuGGCa -3' miRNA: 3'- cuCCugCCGU--UUgAGGUGCaGGu--CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 9876 | 0.7 | 0.782121 |
Target: 5'- cAGGACGGCccGCUCaCccacaaaggcggugACGgCCAGGCa -3' miRNA: 3'- cUCCUGCCGuuUGAG-G--------------UGCaGGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 122490 | 0.7 | 0.783954 |
Target: 5'- cGGGGACGGCGgcggggucgagagAAUggaggCCGCGgagcCCGGGUg -3' miRNA: 3'- -CUCCUGCCGU-------------UUGa----GGUGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 128188 | 0.7 | 0.784868 |
Target: 5'- gGAGG-CGGCccagggGGGCgCCGCGgcgCCGGGCc -3' miRNA: 3'- -CUCCuGCCG------UUUGaGGUGCa--GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 146025 | 0.7 | 0.784868 |
Target: 5'- cAGGGgGGCAGcuccuggcACUgCGCGUCCAGcuGCa -3' miRNA: 3'- cUCCUgCCGUU--------UGAgGUGCAGGUC--CG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 114690 | 0.7 | 0.784868 |
Target: 5'- -uGGACGGCucGCggcucgUCCGCGagacCCGGGCc -3' miRNA: 3'- cuCCUGCCGuuUG------AGGUGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 115059 | 0.69 | 0.793932 |
Target: 5'- aGGGGAagggGGCGAACauUCCGCccacCCAGGCc -3' miRNA: 3'- -CUCCUg---CCGUUUG--AGGUGca--GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 65053 | 0.69 | 0.793932 |
Target: 5'- cGAGGAgCGGCAcugcgucuACUCgGCGgcgCgGGGCa -3' miRNA: 3'- -CUCCU-GCCGUu-------UGAGgUGCa--GgUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 161492 | 0.69 | 0.793932 |
Target: 5'- gGGGGAUGGCAGcCUCUcUGUUguGGUg -3' miRNA: 3'- -CUCCUGCCGUUuGAGGuGCAGguCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 69582 | 0.69 | 0.793932 |
Target: 5'- gGGGGAagaUGGCcAGgUCCuggggcagcgagACGUCCAGGCc -3' miRNA: 3'- -CUCCU---GCCGuUUgAGG------------UGCAGGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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