miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 151681 0.98 0.020415
Target:  5'- uGAGGACGGCAAACU-CACGUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGUUUGAgGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 4315 0.68 0.836931
Target:  5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3'
miRNA:   3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 53206 0.69 0.811622
Target:  5'- gGGGGGCGGCGugccaAACUCCGCGggCCu--- -3'
miRNA:   3'- -CUCCUGCCGU-----UUGAGGUGCa-GGuccg -5'
29131 3' -55.7 NC_006146.1 + 47712 0.7 0.737689
Target:  5'- aGAGGugGGgAgcagcgcccggAGCUCguCGUCCGGGg -3'
miRNA:   3'- -CUCCugCCgU-----------UUGAGguGCAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 93933 0.72 0.627479
Target:  5'- aGGcGGCGGCgGGGCUCCGCucuccGUCcCAGGCg -3'
miRNA:   3'- cUC-CUGCCG-UUUGAGGUG-----CAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 145006 0.68 0.852899
Target:  5'- aAGGugGGCAGGgaggagcuCUCCACcacaauGUucCCGGGCa -3'
miRNA:   3'- cUCCugCCGUUU--------GAGGUG------CA--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 60599 0.68 0.84501
Target:  5'- cAGGGCGGCGAugaacGC-CUACGcCgAGGCc -3'
miRNA:   3'- cUCCUGCCGUU-----UGaGGUGCaGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 22504 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128188 0.7 0.784868
Target:  5'- gGAGG-CGGCccagggGGGCgCCGCGgcgCCGGGCc -3'
miRNA:   3'- -CUCCuGCCG------UUUGaGGUGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 137996 0.7 0.751176
Target:  5'- cGGGGugGGgggugcgcccccagcCGGAC-CCugGUgCCAGGCa -3'
miRNA:   3'- -CUCCugCC---------------GUUUGaGGugCA-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16348 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33966 0.68 0.86059
Target:  5'- cGGGugGGCGuGgUCCGCuggguccgcugGUCCGGuGCa -3'
miRNA:   3'- cUCCugCCGUuUgAGGUG-----------CAGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 156729 0.68 0.85983
Target:  5'- cGGGGGuccagccUGGCGcagacgcucAGCUCCACGgCCAGcGCg -3'
miRNA:   3'- -CUCCU-------GCCGU---------UUGAGGUGCaGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 44248 0.69 0.802853
Target:  5'- -cGGGCGGCGGugUCCAuUGcCCcugcGGGCc -3'
miRNA:   3'- cuCCUGCCGUUugAGGU-GCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 155863 0.72 0.657954
Target:  5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3'
miRNA:   3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 3265 0.72 0.637644
Target:  5'- uGGGGACGGCGcaggCCACGagCCGGGg -3'
miRNA:   3'- -CUCCUGCCGUuugaGGUGCa-GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 102960 0.73 0.575848
Target:  5'- cGAGGGCagccgcccauccgGGaCAuACUCCACGgugggCCGGGCu -3'
miRNA:   3'- -CUCCUG-------------CC-GUuUGAGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94776 0.7 0.747342
Target:  5'- aGAGGGCccaguuGCGGGCcacgUCCACGUaggCCAGGCc -3'
miRNA:   3'- -CUCCUGc-----CGUUUG----AGGUGCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 146025 0.7 0.784868
Target:  5'- cAGGGgGGCAGcuccuggcACUgCGCGUCCAGcuGCa -3'
miRNA:   3'- cUCCUgCCGUU--------UGAgGUGCAGGUC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.