Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 3' | -55.7 | NC_006146.1 | + | 167176 | 0.66 | 0.914377 |
Target: 5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3' miRNA: 3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 140546 | 0.66 | 0.930764 |
Target: 5'- aGGGACGGC--ACcCCAauuCGUCaUAGGCu -3' miRNA: 3'- cUCCUGCCGuuUGaGGU---GCAG-GUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 94868 | 0.66 | 0.94051 |
Target: 5'- aGGGGGCGG-AGAUUCCACa-CgAGGUa -3' miRNA: 3'- -CUCCUGCCgUUUGAGGUGcaGgUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 83059 | 0.66 | 0.94051 |
Target: 5'- aGGGGaAUGGCGucugugacCUCCugGUCgGcGGCg -3' miRNA: 3'- -CUCC-UGCCGUuu------GAGGugCAGgU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 156733 | 0.66 | 0.94051 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 150578 | 0.66 | 0.94051 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 147500 | 0.66 | 0.94051 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 144422 | 0.66 | 0.94051 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 141344 | 0.66 | 0.94051 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 113970 | 0.66 | 0.94051 |
Target: 5'- aGAGGGgGGUgcccggGGGCUCCGCGUUguugaaggagCuGGCg -3' miRNA: 3'- -CUCCUgCCG------UUUGAGGUGCAG----------GuCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 128953 | 0.66 | 0.935754 |
Target: 5'- --uGAUGGCAAaguagcGCUCCACGggccUCGGGUu -3' miRNA: 3'- cucCUGCCGUU------UGAGGUGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 114655 | 0.66 | 0.94051 |
Target: 5'- cGAGGACGGCcccgcCUCCGCccCCGcGGa -3' miRNA: 3'- -CUCCUGCCGuuu--GAGGUGcaGGU-CCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 69976 | 0.66 | 0.930764 |
Target: 5'- uGAGGAUGGCcaaGAACagCACGgUCGGGg -3' miRNA: 3'- -CUCCUGCCG---UUUGagGUGCaGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 42340 | 0.66 | 0.925537 |
Target: 5'- cGAGG-CcGCGAACUgCCGC-UCCAGGa -3' miRNA: 3'- -CUCCuGcCGUUUGA-GGUGcAGGUCCg -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 153656 | 0.66 | 0.925537 |
Target: 5'- aGAGGGCaccuacucgaGGCAGGCUuacaugggagUCAUGguaagCCAGGCc -3' miRNA: 3'- -CUCCUG----------CCGUUUGA----------GGUGCa----GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 122772 | 0.66 | 0.92338 |
Target: 5'- cGGGGGCuGGcCGAACUCCAagagaagagaCGGGCg -3' miRNA: 3'- -CUCCUG-CC-GUUUGAGGUgcag------GUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 12814 | 0.66 | 0.920075 |
Target: 5'- -cGGACGGCGGcuGCcggugCgCAUGUCCAaGGUg -3' miRNA: 3'- cuCCUGCCGUU--UGa----G-GUGCAGGU-CCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 109400 | 0.66 | 0.920075 |
Target: 5'- cAGGGCGGCAGGggcCUCCuCGgagcCCuGGUg -3' miRNA: 3'- cUCCUGCCGUUU---GAGGuGCa---GGuCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 16479 | 0.66 | 0.930252 |
Target: 5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3' miRNA: 3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5' |
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29131 | 3' | -55.7 | NC_006146.1 | + | 22635 | 0.66 | 0.930252 |
Target: 5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3' miRNA: 3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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