miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 114655 0.66 0.94051
Target:  5'- cGAGGACGGCcccgcCUCCGCccCCGcGGa -3'
miRNA:   3'- -CUCCUGCCGuuu--GAGGUGcaGGU-CCg -5'
29131 3' -55.7 NC_006146.1 + 42340 0.66 0.925537
Target:  5'- cGAGG-CcGCGAACUgCCGC-UCCAGGa -3'
miRNA:   3'- -CUCCuGcCGUUUGA-GGUGcAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 153656 0.66 0.925537
Target:  5'- aGAGGGCaccuacucgaGGCAGGCUuacaugggagUCAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUGA----------GGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122772 0.66 0.92338
Target:  5'- cGGGGGCuGGcCGAACUCCAagagaagagaCGGGCg -3'
miRNA:   3'- -CUCCUG-CC-GUUUGAGGUgcag------GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 12814 0.66 0.920075
Target:  5'- -cGGACGGCGGcuGCcggugCgCAUGUCCAaGGUg -3'
miRNA:   3'- cuCCUGCCGUU--UGa----G-GUGCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 109400 0.66 0.920075
Target:  5'- cAGGGCGGCAGGggcCUCCuCGgagcCCuGGUg -3'
miRNA:   3'- cUCCUGCCGUUU---GAGGuGCa---GGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 98301 0.66 0.913794
Target:  5'- uGGGGCugagGGCGuGCUCCguggccgucuggcACGgggCCGGGCg -3'
miRNA:   3'- cUCCUG----CCGUuUGAGG-------------UGCa--GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 167176 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 168108 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 69976 0.66 0.930764
Target:  5'- uGAGGAUGGCcaaGAACagCACGgUCGGGg -3'
miRNA:   3'- -CUCCUGCCG---UUUGagGUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 140546 0.66 0.930764
Target:  5'- aGGGACGGC--ACcCCAauuCGUCaUAGGCu -3'
miRNA:   3'- cUCCUGCCGuuUGaGGU---GCAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128953 0.66 0.935754
Target:  5'- --uGAUGGCAAaguagcGCUCCACGggccUCGGGUu -3'
miRNA:   3'- cucCUGCCGUU------UGAGGUGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 94868 0.66 0.94051
Target:  5'- aGGGGGCGG-AGAUUCCACa-CgAGGUa -3'
miRNA:   3'- -CUCCUGCCgUUUGAGGUGcaGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 83059 0.66 0.94051
Target:  5'- aGGGGaAUGGCGucugugacCUCCugGUCgGcGGCg -3'
miRNA:   3'- -CUCC-UGCCGUuu------GAGGugCAGgU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 156733 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 150578 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 147500 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 144422 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 141344 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 113970 0.66 0.94051
Target:  5'- aGAGGGgGGUgcccggGGGCUCCGCGUUguugaaggagCuGGCg -3'
miRNA:   3'- -CUCCUgCCG------UUUGAGGUGCAG----------GuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.