miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 151681 0.98 0.020415
Target:  5'- uGAGGACGGCAAACU-CACGUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGUUUGAgGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54709 0.8 0.259881
Target:  5'- aGGGGACGGCGGGC-CCGgGUCaGGGCg -3'
miRNA:   3'- -CUCCUGCCGUUUGaGGUgCAGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 70796 0.79 0.30592
Target:  5'- cGGGACcGCAGACUCCuguccacCGUCCGGGUg -3'
miRNA:   3'- cUCCUGcCGUUUGAGGu------GCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 41998 0.78 0.357954
Target:  5'- gGGGGGCGGaCGAGCacgaagcCCGCGUUCGGGCc -3'
miRNA:   3'- -CUCCUGCC-GUUUGa------GGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 78785 0.77 0.404696
Target:  5'- uGAGGAUGGUGuugagcagcaauACUCCcugggaggcccacGCGUCCAGGCa -3'
miRNA:   3'- -CUCCUGCCGUu-----------UGAGG-------------UGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19566 0.75 0.498154
Target:  5'- cGAGGugGGCGAcCUCUcgGUCCGGcGCg -3'
miRNA:   3'- -CUCCugCCGUUuGAGGugCAGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 120643 0.75 0.507755
Target:  5'- cAGGACGGCcuGAACgugUCCugGUUCAaGGCa -3'
miRNA:   3'- cUCCUGCCG--UUUG---AGGugCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 39677 0.74 0.514522
Target:  5'- gGAGG-CGGCGGGCUCCugGgccugcagcgccgcUCCggAGGCa -3'
miRNA:   3'- -CUCCuGCCGUUUGAGGugC--------------AGG--UCCG- -5'
29131 3' -55.7 NC_006146.1 + 44996 0.74 0.537006
Target:  5'- -cGGAgGcGCAGACUCCACGagCCGGaGCu -3'
miRNA:   3'- cuCCUgC-CGUUUGAGGUGCa-GGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 93818 0.74 0.556827
Target:  5'- -cGGACGGC------CACGUCCAGGCa -3'
miRNA:   3'- cuCCUGCCGuuugagGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 102960 0.73 0.575848
Target:  5'- cGAGGGCagccgcccauccgGGaCAuACUCCACGgugggCCGGGCu -3'
miRNA:   3'- -CUCCUG-------------CC-GUuUGAGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 33249 0.73 0.585918
Target:  5'- gGGGGugGG--GGCUCCACGaacccgcuugccuUCCAGGUg -3'
miRNA:   3'- -CUCCugCCguUUGAGGUGC-------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 43148 0.73 0.597034
Target:  5'- uGAGGuCGGCGAuaaucuuCUCCAgGcucUCCGGGCc -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122652 0.73 0.597034
Target:  5'- cAGGACGGCGGcgggggccCUCCGCGcggcgcucacCCAGGCg -3'
miRNA:   3'- cUCCUGCCGUUu-------GAGGUGCa---------GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 28660 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19426 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 25582 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 22504 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16348 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.