miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 361 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 1292 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 2224 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 3156 0.71 0.678182
Target:  5'- gGAGGGCGGCGAcaAUcgCCGCGcCCccucAGGCc -3'
miRNA:   3'- -CUCCUGCCGUU--UGa-GGUGCaGG----UCCG- -5'
29131 3' -55.7 NC_006146.1 + 3265 0.72 0.637644
Target:  5'- uGGGGACGGCGcaggCCACGagCCGGGg -3'
miRNA:   3'- -CUCCUGCCGUuugaGGUGCa-GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 4315 0.68 0.836931
Target:  5'- cGGGGAUGGCAAGaUCCAgGg-CGGGUc -3'
miRNA:   3'- -CUCCUGCCGUUUgAGGUgCagGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 8532 0.68 0.86059
Target:  5'- -cGGGCGcGCcaagGGGCUCCAUcUCCAaGGCg -3'
miRNA:   3'- cuCCUGC-CG----UUUGAGGUGcAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 9160 0.72 0.637644
Target:  5'- cGGGGACGGCGGGCUCCcacCGUgCCAc-- -3'
miRNA:   3'- -CUCCUGCCGUUUGAGGu--GCA-GGUccg -5'
29131 3' -55.7 NC_006146.1 + 9461 0.7 0.775667
Target:  5'- -cGGugGGCGcgGGgUCCGCGcCCucuGGCa -3'
miRNA:   3'- cuCCugCCGU--UUgAGGUGCaGGu--CCG- -5'
29131 3' -55.7 NC_006146.1 + 9876 0.7 0.782121
Target:  5'- cAGGACGGCccGCUCaCccacaaaggcggugACGgCCAGGCa -3'
miRNA:   3'- cUCCUGCCGuuUGAG-G--------------UGCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 12814 0.66 0.920075
Target:  5'- -cGGACGGCGGcuGCcggugCgCAUGUCCAaGGUg -3'
miRNA:   3'- cuCCUGCCGUU--UGa----G-GUGCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13401 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16348 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16479 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19426 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19557 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19566 0.75 0.498154
Target:  5'- cGAGGugGGCGAcCUCUcgGUCCGGcGCg -3'
miRNA:   3'- -CUCCugCCGUUuGAGGugCAGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 22504 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 22635 0.66 0.930252
Target:  5'- aGAGGACGGagGAGCaccucagggugccUCCcCGggucCCAGGCc -3'
miRNA:   3'- -CUCCUGCCg-UUUG-------------AGGuGCa---GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.