miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 169972 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 169040 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 168108 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 167176 0.66 0.914377
Target:  5'- cGGGACGGgAGGCcggCgCGCGcCCGGGg -3'
miRNA:   3'- cUCCUGCCgUUUGa--G-GUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 165681 0.67 0.904774
Target:  5'- cGAGGcCGGCAAggaccugcaccccuaGCUCCc---CCAGGCc -3'
miRNA:   3'- -CUCCuGCCGUU---------------UGAGGugcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 161492 0.69 0.793932
Target:  5'- gGGGGAUGGCAGcCUCUcUGUUguGGUg -3'
miRNA:   3'- -CUCCUGCCGUUuGAGGuGCAGguCCG- -5'
29131 3' -55.7 NC_006146.1 + 159198 0.68 0.878207
Target:  5'- aGAGGACagaaguugguGGCAAAUaUCUGCGUggauaccguggggggCCAGGCu -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-AGGUGCA---------------GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 157575 0.68 0.86059
Target:  5'- uAGGccGCGGCcGACUCCAcCGcCCuGGUg -3'
miRNA:   3'- cUCC--UGCCGuUUGAGGU-GCaGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 156927 0.68 0.86361
Target:  5'- uGGGuGGCGGCGcugacgGGCUCCGCuacgcugauaaaguuGUCCuGGGCu -3'
miRNA:   3'- -CUC-CUGCCGU------UUGAGGUG---------------CAGG-UCCG- -5'
29131 3' -55.7 NC_006146.1 + 156733 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 156729 0.68 0.85983
Target:  5'- cGGGGGuccagccUGGCGcagacgcucAGCUCCACGgCCAGcGCg -3'
miRNA:   3'- -CUCCU-------GCCGU---------UUGAGGUGCaGGUC-CG- -5'
29131 3' -55.7 NC_006146.1 + 156665 0.66 0.920075
Target:  5'- gGAGGAgggcguccaacuCGGCAGaaggcccgcguuGCgcgCCAccgccucccCGUCCAGGCu -3'
miRNA:   3'- -CUCCU------------GCCGUU------------UGa--GGU---------GCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 156338 0.67 0.900386
Target:  5'- uGGGGcucacgccccgaaaGCGGCccagcAGCUCCAgggcccgGUCCAGGCu -3'
miRNA:   3'- -CUCC--------------UGCCGu----UUGAGGUg------CAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 155863 0.72 0.657954
Target:  5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3'
miRNA:   3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 153656 0.66 0.925537
Target:  5'- aGAGGGCaccuacucgaGGCAGGCUuacaugggagUCAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUGA----------GGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 151681 0.98 0.020415
Target:  5'- uGAGGACGGCAAACU-CACGUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGUUUGAgGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 151457 0.68 0.868077
Target:  5'- cAGGACGaaGCGGcGCgCCGCGUCCAcguuGGCu -3'
miRNA:   3'- cUCCUGC--CGUU-UGaGGUGCAGGU----CCG- -5'
29131 3' -55.7 NC_006146.1 + 150578 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 150416 0.66 0.930764
Target:  5'- aGAGGcUGGCAAAgUCCACcaCCAG-Ca -3'
miRNA:   3'- -CUCCuGCCGUUUgAGGUGcaGGUCcG- -5'
29131 3' -55.7 NC_006146.1 + 147500 0.66 0.94051
Target:  5'- aGAGGGCaccuacucgaGGCAGGCuuacaugggagUCUAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUG-----------AGGUGCa----GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.