miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 151681 0.98 0.020415
Target:  5'- uGAGGACGGCAAACU-CACGUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGUUUGAgGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54038 0.71 0.69826
Target:  5'- gGAGGGCGGCcAugUCgGCGguggUCAGGg -3'
miRNA:   3'- -CUCCUGCCGuUugAGgUGCa---GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 48027 0.71 0.727945
Target:  5'- gGAGGcACGGCGGGCcggcucgggucgUCCAgCGccCCGGGCa -3'
miRNA:   3'- -CUCC-UGCCGUUUG------------AGGU-GCa-GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 89697 0.66 0.94051
Target:  5'- cGGGGaACGGCcugGGAUaCaCGgGUCCGGGCc -3'
miRNA:   3'- -CUCC-UGCCG---UUUGaG-GUgCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 102960 0.73 0.575848
Target:  5'- cGAGGGCagccgcccauccgGGaCAuACUCCACGgugggCCGGGCu -3'
miRNA:   3'- -CUCCUG-------------CC-GUuUGAGGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 13270 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 19426 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 22504 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 141744 0.73 0.617317
Target:  5'- aGGGACGGUgcaccgggaAGGCUCaGCGucUCCAGGCu -3'
miRNA:   3'- cUCCUGCCG---------UUUGAGgUGC--AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 128822 0.71 0.68523
Target:  5'- aAGGACGGCGcGgUCCAggagcagguaagccCGgCCAGGCa -3'
miRNA:   3'- cUCCUGCCGUuUgAGGU--------------GCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 3265 0.72 0.637644
Target:  5'- uGGGGACGGCGcaggCCACGagCCGGGg -3'
miRNA:   3'- -CUCCUGCCGUuugaGGUGCa-GGUCCg -5'
29131 3' -55.7 NC_006146.1 + 28660 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 54709 0.8 0.259881
Target:  5'- aGGGGACGGCGGGC-CCGgGUCaGGGCg -3'
miRNA:   3'- -CUCCUGCCGUUUGaGGUgCAGgUCCG- -5'
29131 3' -55.7 NC_006146.1 + 50422 0.72 0.657954
Target:  5'- aGGGACGGCAggcaggccgcaAGCUUCGCGgCCAGauGCa -3'
miRNA:   3'- cUCCUGCCGU-----------UUGAGGUGCaGGUC--CG- -5'
29131 3' -55.7 NC_006146.1 + 120643 0.75 0.507755
Target:  5'- cAGGACGGCcuGAACgugUCCugGUUCAaGGCa -3'
miRNA:   3'- cUCCUGCCG--UUUG---AGGugCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 25582 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 155863 0.72 0.657954
Target:  5'- cAGGccCGGCGGGC-CCugG-CCAGGCg -3'
miRNA:   3'- cUCCu-GCCGUUUGaGGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 127156 0.71 0.71812
Target:  5'- -uGGACGGCGucauGCgcgaccaCCugGcCCGGGCg -3'
miRNA:   3'- cuCCUGCCGUu---UGa------GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 93818 0.74 0.556827
Target:  5'- -cGGACGGC------CACGUCCAGGCa -3'
miRNA:   3'- cuCCUGCCGuuugagGUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 16348 0.73 0.604125
Target:  5'- aGGGGAcCGGCGccccagagccccucGGgUCCGCcUCCAGGCg -3'
miRNA:   3'- -CUCCU-GCCGU--------------UUgAGGUGcAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.