miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 3' -55.7 NC_006146.1 + 140546 0.66 0.930764
Target:  5'- aGGGACGGC--ACcCCAauuCGUCaUAGGCu -3'
miRNA:   3'- cUCCUGCCGuuUGaGGU---GCAG-GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 69976 0.66 0.930764
Target:  5'- uGAGGAUGGCcaaGAACagCACGgUCGGGg -3'
miRNA:   3'- -CUCCUGCCG---UUUGagGUGCaGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 42340 0.66 0.925537
Target:  5'- cGAGG-CcGCGAACUgCCGC-UCCAGGa -3'
miRNA:   3'- -CUCCuGcCGUUUGA-GGUGcAGGUCCg -5'
29131 3' -55.7 NC_006146.1 + 153656 0.66 0.925537
Target:  5'- aGAGGGCaccuacucgaGGCAGGCUuacaugggagUCAUGguaagCCAGGCc -3'
miRNA:   3'- -CUCCUG----------CCGUUUGA----------GGUGCa----GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 122772 0.66 0.92338
Target:  5'- cGGGGGCuGGcCGAACUCCAagagaagagaCGGGCg -3'
miRNA:   3'- -CUCCUG-CC-GUUUGAGGUgcag------GUCCG- -5'
29131 3' -55.7 NC_006146.1 + 12814 0.66 0.920075
Target:  5'- -cGGACGGCGGcuGCcggugCgCAUGUCCAaGGUg -3'
miRNA:   3'- cuCCUGCCGUU--UGa----G-GUGCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 109400 0.66 0.920075
Target:  5'- cAGGGCGGCAGGggcCUCCuCGgagcCCuGGUg -3'
miRNA:   3'- cUCCUGCCGUUU---GAGGuGCa---GGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 24709 0.67 0.908445
Target:  5'- gGAGGAgcccauGCAGcACUa-GCGUCCAGGCg -3'
miRNA:   3'- -CUCCUgc----CGUU-UGAggUGCAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 165681 0.67 0.904774
Target:  5'- cGAGGcCGGCAAggaccugcaccccuaGCUCCc---CCAGGCc -3'
miRNA:   3'- -CUCCuGCCGUU---------------UGAGGugcaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 114616 0.67 0.90228
Target:  5'- cGAGG-CGGC--GCUggACGUCCuGGCc -3'
miRNA:   3'- -CUCCuGCCGuuUGAggUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 59599 0.67 0.90228
Target:  5'- gGAGGGCGGCGucccccgucAGgUCCuuGaggaaaaagugcUCCAGGCc -3'
miRNA:   3'- -CUCCUGCCGU---------UUgAGGugC------------AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 108691 0.67 0.90228
Target:  5'- aGAGGcuGCGGCGcagggcuuuuAGCUUCugGcUCCguGGGCg -3'
miRNA:   3'- -CUCC--UGCCGU----------UUGAGGugC-AGG--UCCG- -5'
29131 3' -55.7 NC_006146.1 + 49077 0.67 0.895886
Target:  5'- aAGGAgGGCugAGGCUCCGgcUGUggcUCAGGCg -3'
miRNA:   3'- cUCCUgCCG--UUUGAGGU--GCA---GGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 84433 0.67 0.89194
Target:  5'- uGAGGAUGGagaaggaaggccuccUAAGCUCCAaGUUCAaGGCc -3'
miRNA:   3'- -CUCCUGCC---------------GUUUGAGGUgCAGGU-CCG- -5'
29131 3' -55.7 NC_006146.1 + 103564 0.67 0.889265
Target:  5'- cGAGGAUgGGCucGCccgggCCugGgCCGGGCu -3'
miRNA:   3'- -CUCCUG-CCGuuUGa----GGugCaGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 43661 0.67 0.889265
Target:  5'- aGAGGGgccCGGCucGCaUUCGC-UCCAGGCc -3'
miRNA:   3'- -CUCCU---GCCGuuUG-AGGUGcAGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 57072 0.67 0.88242
Target:  5'- gGAGGAagaCGGCGuaguccacgAGCggCGCGUCCuGGCc -3'
miRNA:   3'- -CUCCU---GCCGU---------UUGagGUGCAGGuCCG- -5'
29131 3' -55.7 NC_006146.1 + 62424 0.67 0.88242
Target:  5'- cGGGugGGCuGGCUgaaGCGgccUCCGGGCu -3'
miRNA:   3'- cUCCugCCGuUUGAgg-UGC---AGGUCCG- -5'
29131 3' -55.7 NC_006146.1 + 30145 0.68 0.875356
Target:  5'- gGGGGugGGCAugg-CCACGcaUCCGagagcGGCa -3'
miRNA:   3'- -CUCCugCCGUuugaGGUGC--AGGU-----CCG- -5'
29131 3' -55.7 NC_006146.1 + 73052 0.68 0.86059
Target:  5'- cGGGGuCGGCGGcccccucCUCCAgGUCguGGUa -3'
miRNA:   3'- -CUCCuGCCGUUu------GAGGUgCAGguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.