miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 136062 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136248 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 139428 0.66 0.89679
Target:  5'- gCUGUuuaGUAGGAGaAGGCCcccacGgUGCCCGg -3'
miRNA:   3'- -GACG---CAUCUUCaUCCGGa----CgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 24210 0.66 0.87609
Target:  5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3'
miRNA:   3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 120525 0.66 0.87609
Target:  5'- -cGCGUGGAugcGgcGGCgggaCUGCUGgCCAa -3'
miRNA:   3'- gaCGCAUCUu--CauCCG----GACGACgGGU- -5'
29131 5' -56.4 NC_006146.1 + 135289 0.66 0.87609
Target:  5'- ---aGUGGggGgcuaAGGCa-GCUGCCCAc -3'
miRNA:   3'- gacgCAUCuuCa---UCCGgaCGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137363 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135691 0.66 0.888756
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGu -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137270 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136527 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 51835 0.66 0.89679
Target:  5'- -aGCGccGGAGGUGGGCUgcgGUUGCaggCCAg -3'
miRNA:   3'- gaCGCa-UCUUCAUCCGGa--CGACG---GGU- -5'
29131 5' -56.4 NC_006146.1 + 136155 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137177 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136620 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137084 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 128053 0.66 0.883217
Target:  5'- cCUGCGc----GUGGGCCUgGCgGCCCu -3'
miRNA:   3'- -GACGCaucuuCAUCCGGA-CGaCGGGu -5'
29131 5' -56.4 NC_006146.1 + 48628 0.66 0.87609
Target:  5'- gUGcCGUGGggGcGGGCUccggGCgggUGCCCAg -3'
miRNA:   3'- gAC-GCAUCuuCaUCCGGa---CG---ACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137549 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 137456 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 42538 0.67 0.845439
Target:  5'- -gGCGUacuGGGAGgGGGCCUGUccGUCCGu -3'
miRNA:   3'- gaCGCA---UCUUCaUCCGGACGa-CGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.