Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 51835 | 0.66 | 0.89679 |
Target: 5'- -aGCGccGGAGGUGGGCUgcgGUUGCaggCCAg -3' miRNA: 3'- gaCGCa-UCUUCAUCCGGa--CGACG---GGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135505 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135598 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135783 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 94595 | 0.66 | 0.868744 |
Target: 5'- uCUGCGUGGGAGaggaAGaGCC-GCguccaGCCCAc -3' miRNA: 3'- -GACGCAUCUUCa---UC-CGGaCGa----CGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 136248 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 136713 | 0.66 | 0.873909 |
Target: 5'- -gGCG-GGggGUggccggccgcugccGGGUCcGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA--------------UCCGGaCGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 136062 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135969 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135412 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135226 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 136155 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 139428 | 0.66 | 0.89679 |
Target: 5'- gCUGUuuaGUAGGAGaAGGCCcccacGgUGCCCGg -3' miRNA: 3'- -GACG---CAUCUUCaUCCGGa----CgACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 24210 | 0.66 | 0.87609 |
Target: 5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3' miRNA: 3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 120525 | 0.66 | 0.87609 |
Target: 5'- -cGCGUGGAugcGgcGGCgggaCUGCUGgCCAa -3' miRNA: 3'- gaCGCAUCUu--CauCCG----GACGACgGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135289 | 0.66 | 0.87609 |
Target: 5'- ---aGUGGggGgcuaAGGCa-GCUGCCCAc -3' miRNA: 3'- gacgCAUCuuCa---UCCGgaCGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 136341 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 46453 | 0.66 | 0.89679 |
Target: 5'- -gGCGgcGgcGUAGGCCggaUGCgUGCCg- -3' miRNA: 3'- gaCGCauCuuCAUCCGG---ACG-ACGGgu -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135876 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 135133 | 0.66 | 0.874639 |
Target: 5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3' miRNA: 3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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