miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 151718 1.09 0.002534
Target:  5'- cCUGCGUAGAAGUAGGCCUGCUGCCCAa -3'
miRNA:   3'- -GACGCAUCUUCAUCCGGACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135319 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135505 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 46453 0.66 0.89679
Target:  5'- -gGCGgcGgcGUAGGCCggaUGCgUGCCg- -3'
miRNA:   3'- gaCGCauCuuCAUCCGG---ACG-ACGGgu -5'
29131 5' -56.4 NC_006146.1 + 52312 0.69 0.73285
Target:  5'- -cGCGUAGGugcugacccugacGUGGGCCggGgUGCCCGg -3'
miRNA:   3'- gaCGCAUCUu------------CAUCCGGa-CgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 65757 0.69 0.736788
Target:  5'- cCUGCGgcggucucguUAGAGG-AGGCCUcGCUGCUa- -3'
miRNA:   3'- -GACGC----------AUCUUCaUCCGGA-CGACGGgu -5'
29131 5' -56.4 NC_006146.1 + 160145 0.68 0.770552
Target:  5'- -gGgGUAGAAGUAgauguagccgcauGGCCccggcuggcucugGCUGCCCAg -3'
miRNA:   3'- gaCgCAUCUUCAU-------------CCGGa------------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 134158 0.68 0.811664
Target:  5'- cCUGCGgaacccuaAGAGGgGGGCCUGCacGCCgAg -3'
miRNA:   3'- -GACGCa-------UCUUCaUCCGGACGa-CGGgU- -5'
29131 5' -56.4 NC_006146.1 + 94953 0.67 0.861183
Target:  5'- gCUGCgGUAGAGGgGGGUgUGCaGCCa- -3'
miRNA:   3'- -GACG-CAUCUUCaUCCGgACGaCGGgu -5'
29131 5' -56.4 NC_006146.1 + 135226 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 94595 0.66 0.868744
Target:  5'- uCUGCGUGGGAGaggaAGaGCC-GCguccaGCCCAc -3'
miRNA:   3'- -GACGCAUCUUCa---UC-CGGaCGa----CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 8946 0.67 0.83727
Target:  5'- aUGgGgcuggGGAAGUuuaGCCUGCUGCCa- -3'
miRNA:   3'- gACgCa----UCUUCAuc-CGGACGACGGgu -5'
29131 5' -56.4 NC_006146.1 + 41389 0.73 0.523772
Target:  5'- uCUGCuGUuucuGAGGUGGGCCUGaUGUCCGc -3'
miRNA:   3'- -GACG-CAu---CUUCAUCCGGACgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 136713 0.66 0.873909
Target:  5'- -gGCG-GGggGUggccggccgcugccGGGUCcGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA--------------UCCGGaCGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 51837 0.71 0.594365
Target:  5'- -gGCGUGGAGGggggcucgGGGCCUG--GCCCGa -3'
miRNA:   3'- gaCGCAUCUUCa-------UCCGGACgaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 58879 0.67 0.83727
Target:  5'- cCUGU---GAAGgAGGCCUGCaacGCCCAc -3'
miRNA:   3'- -GACGcauCUUCaUCCGGACGa--CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135133 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 135412 0.66 0.874639
Target:  5'- -gGCG-GGggGUggccGGGCCgcugccggguccGCUGCCCGg -3'
miRNA:   3'- gaCGCaUCuuCA----UCCGGa-----------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 167144 0.71 0.645746
Target:  5'- -cGCGUAGaAAGUGGGCaCUGUgccaggGCCUu -3'
miRNA:   3'- gaCGCAUC-UUCAUCCG-GACGa-----CGGGu -5'
29131 5' -56.4 NC_006146.1 + 92089 0.68 0.764861
Target:  5'- gCUGCcUGGAcgcGUGGGCCucccagggaguauUGCUGCUCAa -3'
miRNA:   3'- -GACGcAUCUu--CAUCCGG-------------ACGACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.