miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 151718 1.09 0.002534
Target:  5'- cCUGCGUAGAAGUAGGCCUGCUGCCCAa -3'
miRNA:   3'- -GACGCAUCUUCAUCCGGACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 14632 0.74 0.475356
Target:  5'- gCUGCGUGGggGa--GCUcauggUGCUGCCCAa -3'
miRNA:   3'- -GACGCAUCuuCaucCGG-----ACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 139643 0.73 0.513926
Target:  5'- aUGUGUugAGGAGgaggAGGCCUGCauggaGCCCAc -3'
miRNA:   3'- gACGCA--UCUUCa---UCCGGACGa----CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 41389 0.73 0.523772
Target:  5'- uCUGCuGUuucuGAGGUGGGCCUGaUGUCCGc -3'
miRNA:   3'- -GACG-CAu---CUUCAUCCGGACgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 51837 0.71 0.594365
Target:  5'- -gGCGUGGAGGggggcucgGGGCCUG--GCCCGa -3'
miRNA:   3'- gaCGCAUCUUCa-------UCCGGACgaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 167144 0.71 0.645746
Target:  5'- -cGCGUAGaAAGUGGGCaCUGUgccaggGCCUu -3'
miRNA:   3'- gaCGCAUC-UUCAUCCG-GACGa-----CGGGu -5'
29131 5' -56.4 NC_006146.1 + 115129 0.7 0.656022
Target:  5'- -aGCGUGGu----GGCCUcGCUGCCCc -3'
miRNA:   3'- gaCGCAUCuucauCCGGA-CGACGGGu -5'
29131 5' -56.4 NC_006146.1 + 59748 0.7 0.676506
Target:  5'- --aCGUAGAGGgaggAGGCCaGCcGCCCGg -3'
miRNA:   3'- gacGCAUCUUCa---UCCGGaCGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 40018 0.7 0.696844
Target:  5'- -gGCGUAGcAGgGGGCCUGCUggggGCCg- -3'
miRNA:   3'- gaCGCAUCuUCaUCCGGACGA----CGGgu -5'
29131 5' -56.4 NC_006146.1 + 52312 0.69 0.73285
Target:  5'- -cGCGUAGGugcugacccugacGUGGGCCggGgUGCCCGg -3'
miRNA:   3'- gaCGCAUCUu------------CAUCCGGa-CgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 65757 0.69 0.736788
Target:  5'- cCUGCGgcggucucguUAGAGG-AGGCCUcGCUGCUa- -3'
miRNA:   3'- -GACGC----------AUCUUCaUCCGGA-CGACGGgu -5'
29131 5' -56.4 NC_006146.1 + 36656 0.69 0.750451
Target:  5'- -gGCGcGGggGUucucugaggcuacauGGGCCUGCaGUCCAc -3'
miRNA:   3'- gaCGCaUCuuCA---------------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 139551 0.69 0.756246
Target:  5'- gCUGCGUGuguuGAGUauaaugAGGCCUGUaaGCCCAa -3'
miRNA:   3'- -GACGCAUc---UUCA------UCCGGACGa-CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 92089 0.68 0.764861
Target:  5'- gCUGCcUGGAcgcGUGGGCCucccagggaguauUGCUGCUCAa -3'
miRNA:   3'- -GACGcAUCUu--CAUCCGG-------------ACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 36966 0.68 0.765813
Target:  5'- aCUGCGUcacuGUAGGUgaaCUGCgGCCCAc -3'
miRNA:   3'- -GACGCAucuuCAUCCG---GACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 160145 0.68 0.770552
Target:  5'- -gGgGUAGAAGUAgauguagccgcauGGCCccggcuggcucugGCUGCCCAg -3'
miRNA:   3'- gaCgCAUCUUCAU-------------CCGGa------------CGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 23768 0.68 0.784577
Target:  5'- -cGCGgccgAGAAuGgcGGCCUGCgcgucugggGCCCGc -3'
miRNA:   3'- gaCGCa---UCUU-CauCCGGACGa--------CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 143106 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 146184 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 149262 0.68 0.811664
Target:  5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3'
miRNA:   3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.