miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29131 5' -56.4 NC_006146.1 + 8946 0.67 0.83727
Target:  5'- aUGgGgcuggGGAAGUuuaGCCUGCUGCCa- -3'
miRNA:   3'- gACgCa----UCUUCAuc-CGGACGACGGgu -5'
29131 5' -56.4 NC_006146.1 + 14632 0.74 0.475356
Target:  5'- gCUGCGUGGggGa--GCUcauggUGCUGCCCAa -3'
miRNA:   3'- -GACGCAUCuuCaucCGG-----ACGACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 23768 0.68 0.784577
Target:  5'- -cGCGgccgAGAAuGgcGGCCUGCgcgucugggGCCCGc -3'
miRNA:   3'- gaCGCa---UCUU-CauCCGGACGa--------CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 24210 0.66 0.87609
Target:  5'- cCUGCG-AGGuucuGUugGGGCCgggGCcGCCCAc -3'
miRNA:   3'- -GACGCaUCUu---CA--UCCGGa--CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 36656 0.69 0.750451
Target:  5'- -gGCGcGGggGUucucugaggcuacauGGGCCUGCaGUCCAc -3'
miRNA:   3'- gaCGCaUCuuCA---------------UCCGGACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 36966 0.68 0.765813
Target:  5'- aCUGCGUcacuGUAGGUgaaCUGCgGCCCAc -3'
miRNA:   3'- -GACGCAucuuCAUCCG---GACGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 40018 0.7 0.696844
Target:  5'- -gGCGUAGcAGgGGGCCUGCUggggGCCg- -3'
miRNA:   3'- gaCGCAUCuUCaUCCGGACGA----CGGgu -5'
29131 5' -56.4 NC_006146.1 + 40361 0.68 0.811664
Target:  5'- uCUGCGgcGGAGaAGGCCcccuggucGCcGCCCGg -3'
miRNA:   3'- -GACGCauCUUCaUCCGGa-------CGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 41389 0.73 0.523772
Target:  5'- uCUGCuGUuucuGAGGUGGGCCUGaUGUCCGc -3'
miRNA:   3'- -GACG-CAu---CUUCAUCCGGACgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 42538 0.67 0.845439
Target:  5'- -gGCGUacuGGGAGgGGGCCUGUccGUCCGu -3'
miRNA:   3'- gaCGCA---UCUUCaUCCGGACGa-CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 46453 0.66 0.89679
Target:  5'- -gGCGgcGgcGUAGGCCggaUGCgUGCCg- -3'
miRNA:   3'- gaCGCauCuuCAUCCGG---ACG-ACGGgu -5'
29131 5' -56.4 NC_006146.1 + 48628 0.66 0.87609
Target:  5'- gUGcCGUGGggGcGGGCUccggGCgggUGCCCAg -3'
miRNA:   3'- gAC-GCAUCuuCaUCCGGa---CG---ACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 51178 0.68 0.811664
Target:  5'- -gGUGUGGAAGgGGGUCUGCggGCUg- -3'
miRNA:   3'- gaCGCAUCUUCaUCCGGACGa-CGGgu -5'
29131 5' -56.4 NC_006146.1 + 51835 0.66 0.89679
Target:  5'- -aGCGccGGAGGUGGGCUgcgGUUGCaggCCAg -3'
miRNA:   3'- gaCGCa-UCUUCAUCCGGa--CGACG---GGU- -5'
29131 5' -56.4 NC_006146.1 + 51837 0.71 0.594365
Target:  5'- -gGCGUGGAGGggggcucgGGGCCUG--GCCCGa -3'
miRNA:   3'- gaCGCAUCUUCa-------UCCGGACgaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 52312 0.69 0.73285
Target:  5'- -cGCGUAGGugcugacccugacGUGGGCCggGgUGCCCGg -3'
miRNA:   3'- gaCGCAUCUu------------CAUCCGGa-CgACGGGU- -5'
29131 5' -56.4 NC_006146.1 + 58879 0.67 0.83727
Target:  5'- cCUGU---GAAGgAGGCCUGCaacGCCCAc -3'
miRNA:   3'- -GACGcauCUUCaUCCGGACGa--CGGGU- -5'
29131 5' -56.4 NC_006146.1 + 59748 0.7 0.676506
Target:  5'- --aCGUAGAGGgaggAGGCCaGCcGCCCGg -3'
miRNA:   3'- gacGCAUCUUCa---UCCGGaCGaCGGGU- -5'
29131 5' -56.4 NC_006146.1 + 63119 0.66 0.890118
Target:  5'- cCUGCGcAGGugccccUGGGaCCUGCUGgCCAu -3'
miRNA:   3'- -GACGCaUCUuc----AUCC-GGACGACgGGU- -5'
29131 5' -56.4 NC_006146.1 + 65082 0.67 0.853412
Target:  5'- -cGCGgggcAGGAG-GGGCCcuauucUGCUGCCUAc -3'
miRNA:   3'- gaCGCa---UCUUCaUCCGG------ACGACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.