Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29131 | 5' | -56.4 | NC_006146.1 | + | 125996 | 0.67 | 0.861183 |
Target: 5'- gCUGCGaggcuUGGGAGUGGGggcggugggcuUCUGCUGCUgGg -3' miRNA: 3'- -GACGC-----AUCUUCAUCC-----------GGACGACGGgU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 65082 | 0.67 | 0.853412 |
Target: 5'- -cGCGgggcAGGAG-GGGCCcuauucUGCUGCCUAc -3' miRNA: 3'- gaCGCa---UCUUCaUCCGG------ACGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 42538 | 0.67 | 0.845439 |
Target: 5'- -gGCGUacuGGGAGgGGGCCUGUccGUCCGu -3' miRNA: 3'- gaCGCA---UCUUCaUCCGGACGa-CGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 8946 | 0.67 | 0.83727 |
Target: 5'- aUGgGgcuggGGAAGUuuaGCCUGCUGCCa- -3' miRNA: 3'- gACgCa----UCUUCAuc-CGGACGACGGgu -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 58879 | 0.67 | 0.83727 |
Target: 5'- cCUGU---GAAGgAGGCCUGCaacGCCCAc -3' miRNA: 3'- -GACGcauCUUCaUCCGGACGa--CGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 154681 | 0.67 | 0.83727 |
Target: 5'- -gGCcUGGGAGUccGGgguguugaGCCUGCUGCCCc -3' miRNA: 3'- gaCGcAUCUUCA--UC--------CGGACGACGGGu -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 152340 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 149262 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 146184 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 143106 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 40361 | 0.68 | 0.811664 |
Target: 5'- uCUGCGgcGGAGaAGGCCcccuggucGCcGCCCGg -3' miRNA: 3'- -GACGCauCUUCaUCCGGa-------CGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 158497 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 51178 | 0.68 | 0.811664 |
Target: 5'- -gGUGUGGAAGgGGGUCUGCggGCUg- -3' miRNA: 3'- gaCGCAUCUUCaUCCGGACGa-CGGgu -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 134158 | 0.68 | 0.811664 |
Target: 5'- cCUGCGgaacccuaAGAGGgGGGCCUGCacGCCgAg -3' miRNA: 3'- -GACGCa-------UCUUCaUCCGGACGa-CGGgU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 155418 | 0.68 | 0.811664 |
Target: 5'- uCUGggacUGUAGAGGgagaggcaGGGCCUGUaGCCCGu -3' miRNA: 3'- -GAC----GCAUCUUCa-------UCCGGACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 23768 | 0.68 | 0.784577 |
Target: 5'- -cGCGgccgAGAAuGgcGGCCUGCgcgucugggGCCCGc -3' miRNA: 3'- gaCGCa---UCUU-CauCCGGACGa--------CGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 160145 | 0.68 | 0.770552 |
Target: 5'- -gGgGUAGAAGUAgauguagccgcauGGCCccggcuggcucugGCUGCCCAg -3' miRNA: 3'- gaCgCAUCUUCAU-------------CCGGa------------CGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 36966 | 0.68 | 0.765813 |
Target: 5'- aCUGCGUcacuGUAGGUgaaCUGCgGCCCAc -3' miRNA: 3'- -GACGCAucuuCAUCCG---GACGaCGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 92089 | 0.68 | 0.764861 |
Target: 5'- gCUGCcUGGAcgcGUGGGCCucccagggaguauUGCUGCUCAa -3' miRNA: 3'- -GACGcAUCUu--CAUCCGG-------------ACGACGGGU- -5' |
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29131 | 5' | -56.4 | NC_006146.1 | + | 139551 | 0.69 | 0.756246 |
Target: 5'- gCUGCGUGuguuGAGUauaaugAGGCCUGUaaGCCCAa -3' miRNA: 3'- -GACGCAUc---UUCA------UCCGGACGa-CGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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