miRNA display CGI


Results 21 - 40 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29132 5' -61.8 NC_006146.1 + 33867 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35074 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35353 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34889 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34238 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34703 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34981 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35260 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34796 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34610 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34331 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 33495 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34424 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34517 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35167 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35632 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 8501 0.81 0.094024
Target:  5'- cCACCAUCCUGGcCCACCGGGGucCCGGGc -3'
miRNA:   3'- aGUGGUGGGGCC-GGUGGUCCU--GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 46969 0.8 0.120628
Target:  5'- uUCGCCGgCCCGGCCGCC---GCCAGGa -3'
miRNA:   3'- -AGUGGUgGGGCCGGUGGuccUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 14086 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 17164 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.