miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29132 5' -61.8 NC_006146.1 + 152521 1.11 0.000833
Target:  5'- aUCACCACCCCGGCCACCAGGACCAGGg -3'
miRNA:   3'- -AGUGGUGGGGCCGGUGGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 154878 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 145645 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 142567 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 148722 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 33310 0.83 0.076844
Target:  5'- gCACCcggcCCCCGGCCcgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu-----GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 151800 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 157956 0.83 0.076844
Target:  5'- -aGCUACCCCaaGGCCACCgggcGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGGUGG----UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 56182 0.82 0.080834
Target:  5'- gCGCCGauaCUCGGCCGCCAGGGCCcGGg -3'
miRNA:   3'- aGUGGUg--GGGCCGGUGGUCCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 43327 0.82 0.082902
Target:  5'- gCGCgGCCUCGGCCGcCCAGGGCCAGc -3'
miRNA:   3'- aGUGgUGGGGCCGGU-GGUCCUGGUCc -5'
29132 5' -61.8 NC_006146.1 + 35446 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34052 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34610 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34145 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34796 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35632 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34238 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35539 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 35353 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 34889 0.82 0.085021
Target:  5'- gCACCcggcCCCCGGCCccgagcuCCAGGACCGGGc -3'
miRNA:   3'- aGUGGu---GGGGCCGGu------GGUCCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.