miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29132 5' -61.8 NC_006146.1 + 333 0.68 0.595592
Target:  5'- gUCAUUcUCCCGGCCAaCGGGAgCAGa -3'
miRNA:   3'- -AGUGGuGGGGCCGGUgGUCCUgGUCc -5'
29132 5' -61.8 NC_006146.1 + 375 0.67 0.624646
Target:  5'- aUCGCCgcgcccccucagGCCCCGcCCGCCgcgcgcugGGGGuCCGGGg -3'
miRNA:   3'- -AGUGG------------UGGGGCcGGUGG--------UCCU-GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 711 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 911 0.66 0.720754
Target:  5'- gCGCCGCCCCccgGGaCC-CCGGGcgcgcGCCGGc -3'
miRNA:   3'- aGUGGUGGGG---CC-GGuGGUCC-----UGGUCc -5'
29132 5' -61.8 NC_006146.1 + 1642 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 1843 0.66 0.720754
Target:  5'- gCGCCGCCCCccgGGaCC-CCGGGcgcgcGCCGGc -3'
miRNA:   3'- aGUGGUGGGG---CC-GGuGGUCC-----UGGUCc -5'
29132 5' -61.8 NC_006146.1 + 2405 0.66 0.730115
Target:  5'- cUCugUugguCCCCGGCC-CCccGACCGuGGa -3'
miRNA:   3'- -AGugGu---GGGGCCGGuGGucCUGGU-CC- -5'
29132 5' -61.8 NC_006146.1 + 2574 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 2775 0.66 0.720754
Target:  5'- gCGCCGCCCCccgGGaCC-CCGGGcgcgcGCCGGc -3'
miRNA:   3'- aGUGGUGGGG---CC-GGuGGUCC-----UGGUCc -5'
29132 5' -61.8 NC_006146.1 + 3506 0.66 0.730115
Target:  5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3'
miRNA:   3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 3707 0.66 0.720754
Target:  5'- gCGCCGCCCCccgGGaCC-CCGGGcgcgcGCCGGc -3'
miRNA:   3'- aGUGGUGGGG---CC-GGuGGUCC-----UGGUCc -5'
29132 5' -61.8 NC_006146.1 + 4264 0.66 0.720754
Target:  5'- -gAUCACgCCGGUaCugCAGaGAUCAGGg -3'
miRNA:   3'- agUGGUGgGGCCG-GugGUC-CUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 4653 0.67 0.624646
Target:  5'- aCAUaUACCCC-GCCGuCCuGGGCCGGGu -3'
miRNA:   3'- aGUG-GUGGGGcCGGU-GGuCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 4939 0.68 0.557216
Target:  5'- -gGCCguGCUCUGuGCCcCgGGGACCAGGg -3'
miRNA:   3'- agUGG--UGGGGC-CGGuGgUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 8501 0.81 0.094024
Target:  5'- cCACCAUCCUGGcCCACCGGGGucCCGGGc -3'
miRNA:   3'- aGUGGUGGGGCC-GGUGGUCCU--GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 8570 0.7 0.492022
Target:  5'- gCugCAgCCCGGgCugCAGcACCAGGc -3'
miRNA:   3'- aGugGUgGGGCCgGugGUCcUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 10807 0.68 0.585948
Target:  5'- gUCGCCACgcugggcaCCGGCUACaCGGGcCaCAGGu -3'
miRNA:   3'- -AGUGGUGg-------GGCCGGUG-GUCCuG-GUCC- -5'
29132 5' -61.8 NC_006146.1 + 11002 0.68 0.604293
Target:  5'- cCAUCuucgaggGCCCCGGCCucgaggcccucuGCgAGGAgaCCAGGg -3'
miRNA:   3'- aGUGG-------UGGGGCCGG------------UGgUCCU--GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 11469 0.7 0.482086
Target:  5'- uUCcCCGCCUCGaccaucaGCCACCcGGACuCGGGg -3'
miRNA:   3'- -AGuGGUGGGGC-------CGGUGGuCCUG-GUCC- -5'
29132 5' -61.8 NC_006146.1 + 12054 0.67 0.663424
Target:  5'- cCACCAgCCCCauguGCuCGCUuugcgAGGGCCGGGc -3'
miRNA:   3'- aGUGGU-GGGGc---CG-GUGG-----UCCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.