miRNA display CGI


Results 1 - 20 of 514 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29132 5' -61.8 NC_006146.1 + 152521 1.11 0.000833
Target:  5'- aUCACCACCCCGGCCACCAGGACCAGGg -3'
miRNA:   3'- -AGUGGUGGGGCCGGUGGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 152052 0.75 0.235894
Target:  5'- cCACCACCCCGGCagcgcCCGGGGUCuGGa -3'
miRNA:   3'- aGUGGUGGGGCCGgu---GGUCCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 99655 0.74 0.270347
Target:  5'- -gGCCGCCCCccgccaGGCC-CCAGGaguugaccaGCCAGGa -3'
miRNA:   3'- agUGGUGGGG------CCGGuGGUCC---------UGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 167636 0.66 0.730115
Target:  5'- gUC-CCGCggggCCCGGCgCguGCCGGGGgcCCGGGg -3'
miRNA:   3'- -AGuGGUG----GGGCCG-G--UGGUCCU--GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 14086 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 17164 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 23320 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 26398 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 148489 0.79 0.143256
Target:  5'- -gGCCACCUgGGUCACCacgguggaccccGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGgCCGGUGG------------UCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 117224 0.76 0.215028
Target:  5'- -uGCUGCCCCcgGGCUuccuggaaagcgGCCGGGGCCAGGg -3'
miRNA:   3'- agUGGUGGGG--CCGG------------UGGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 50404 0.78 0.154096
Target:  5'- cUCGCguCCUCGGCCGCCAGGGacggCAGGc -3'
miRNA:   3'- -AGUGguGGGGCCGGUGGUCCUg---GUCC- -5'
29132 5' -61.8 NC_006146.1 + 159470 0.79 0.139801
Target:  5'- cCGCCACCuuGGCCACCuuGGCCuGGu -3'
miRNA:   3'- aGUGGUGGggCCGGUGGucCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 56182 0.82 0.080834
Target:  5'- gCGCCGauaCUCGGCCGCCAGGGCCcGGg -3'
miRNA:   3'- aGUGGUg--GGGCCGGUGGUCCUGGuCC- -5'
29132 5' -61.8 NC_006146.1 + 31827 0.78 0.154096
Target:  5'- -aGCC-CCCCGcGCCACCAGGGCCcguauGGu -3'
miRNA:   3'- agUGGuGGGGC-CGGUGGUCCUGGu----CC- -5'
29132 5' -61.8 NC_006146.1 + 43327 0.82 0.082902
Target:  5'- gCGCgGCCUCGGCCGcCCAGGGCCAGc -3'
miRNA:   3'- aGUGgUGGGGCCGGU-GGUCCUGGUCc -5'
29132 5' -61.8 NC_006146.1 + 29476 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5'
29132 5' -61.8 NC_006146.1 + 66879 0.77 0.19119
Target:  5'- gCGCC-CCCCGGgucuugagauCCAgauCCAGGACCAGGu -3'
miRNA:   3'- aGUGGuGGGGCC----------GGU---GGUCCUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 129847 0.75 0.24137
Target:  5'- cCACCccgagGCCCCcagGGCCGCCGcGGACgGGGg -3'
miRNA:   3'- aGUGG-----UGGGG---CCGGUGGU-CCUGgUCC- -5'
29132 5' -61.8 NC_006146.1 + 46969 0.8 0.120628
Target:  5'- uUCGCCGgCCCGGCCGCC---GCCAGGa -3'
miRNA:   3'- -AGUGGUgGGGCCGGUGGuccUGGUCC- -5'
29132 5' -61.8 NC_006146.1 + 20242 0.8 0.123644
Target:  5'- cCACCccuCCCCGGCCACCccAGGcccguCCAGGg -3'
miRNA:   3'- aGUGGu--GGGGCCGGUGG--UCCu----GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.