Results 1 - 20 of 514 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29132 | 5' | -61.8 | NC_006146.1 | + | 167636 | 0.66 | 0.730115 |
Target: 5'- gUC-CCGCggggCCCGGCgCguGCCGGGGgcCCGGGg -3' miRNA: 3'- -AGuGGUG----GGGCCG-G--UGGUCCU--GGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 61564 | 0.66 | 0.728249 |
Target: 5'- uUCcCCACCCCgagGGCCacgcugaggaagaGCCGGcugcagcggccgcGGCCGGGg -3' miRNA: 3'- -AGuGGUGGGG---CCGG-------------UGGUC-------------CUGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 119044 | 0.66 | 0.720754 |
Target: 5'- aUCcCCAuCCCCGG--GCUcGGGCCAGGc -3' miRNA: 3'- -AGuGGU-GGGGCCggUGGuCCUGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 77548 | 0.66 | 0.720754 |
Target: 5'- -gGCCACgUguacgUGGCgCuguCCAGGGCCAGGc -3' miRNA: 3'- agUGGUGgG-----GCCG-Gu--GGUCCUGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 35771 | 0.66 | 0.720754 |
Target: 5'- gCAgCGgCCCGGCCACCccccGCCGGa -3' miRNA: 3'- aGUgGUgGGGCCGGUGGucc-UGGUCc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 68056 | 0.66 | 0.720754 |
Target: 5'- -gGCUGCCCUGGCUGCCAa---CAGGg -3' miRNA: 3'- agUGGUGGGGCCGGUGGUccugGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 22349 | 0.66 | 0.720754 |
Target: 5'- aCAUCAaaCCGGCCACCacccaucauggcAGuGGCCAGc -3' miRNA: 3'- aGUGGUggGGCCGGUGG------------UC-CUGGUCc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 3707 | 0.66 | 0.720754 |
Target: 5'- gCGCCGCCCCccgGGaCC-CCGGGcgcgcGCCGGc -3' miRNA: 3'- aGUGGUGGGG---CC-GGuGGUCC-----UGGUCc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 2775 | 0.66 | 0.720754 |
Target: 5'- gCGCCGCCCCccgGGaCC-CCGGGcgcgcGCCGGc -3' miRNA: 3'- aGUGGUGGGG---CC-GGuGGUCC-----UGGUCc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 71510 | 0.66 | 0.729183 |
Target: 5'- gCACCcCCCUGGCCGacucgcuCCuGGGCCu-- -3' miRNA: 3'- aGUGGuGGGGCCGGU-------GGuCCUGGucc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 137467 | 0.66 | 0.730115 |
Target: 5'- ---gCACCCgGaGCC-CCAGGACCGa- -3' miRNA: 3'- agugGUGGGgC-CGGuGGUCCUGGUcc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 711 | 0.66 | 0.730115 |
Target: 5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3' miRNA: 3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 159734 | 0.66 | 0.730115 |
Target: 5'- gCGcCCGCCUuugaagcaauuuCGGCCccuguguuuuuACCuGGGCCGGGg -3' miRNA: 3'- aGU-GGUGGG------------GCCGG-----------UGGuCCUGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 137807 | 0.66 | 0.730115 |
Target: 5'- -gGCCA-CCCGGCUGCCccagagccgcAGGGCCGa- -3' miRNA: 3'- agUGGUgGGGCCGGUGG----------UCCUGGUcc -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 104100 | 0.66 | 0.730115 |
Target: 5'- aCuCCGCCUCaugcGCCGCCuGGGCCcGGu -3' miRNA: 3'- aGuGGUGGGGc---CGGUGGuCCUGGuCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 43701 | 0.66 | 0.730115 |
Target: 5'- -gGCCACUaCGGCguCCAGGuCCuGGc -3' miRNA: 3'- agUGGUGGgGCCGguGGUCCuGGuCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 37850 | 0.66 | 0.730115 |
Target: 5'- -aACCACCCUGGagaCGCCAGacguACCcGGc -3' miRNA: 3'- agUGGUGGGGCCg--GUGGUCc---UGGuCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 3506 | 0.66 | 0.730115 |
Target: 5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3' miRNA: 3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 2574 | 0.66 | 0.730115 |
Target: 5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3' miRNA: 3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5' |
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29132 | 5' | -61.8 | NC_006146.1 | + | 1642 | 0.66 | 0.730115 |
Target: 5'- cCGCCagGCCCCGGCC-CCGcccUCGGGa -3' miRNA: 3'- aGUGG--UGGGGCCGGuGGUccuGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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