Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29133 | 3' | -59.3 | NC_006146.1 | + | 60792 | 0.68 | 0.635432 |
Target: 5'- --aGCCGGaCCAGGUcCAGGGccuGGUCc -3' miRNA: 3'- cuaCGGCCcGGUCUA-GUCCCu--CCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 144654 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 141576 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 106646 | 0.66 | 0.771824 |
Target: 5'- -cUGCUGcGGCCGGcugGUCAGGGccGUCc -3' miRNA: 3'- cuACGGC-CCGGUC---UAGUCCCucCAGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 61503 | 0.66 | 0.76258 |
Target: 5'- -cUGaCCGacGGCCGuccGAUCAGGGAGGcCu -3' miRNA: 3'- cuAC-GGC--CCGGU---CUAGUCCCUCCaGu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 46495 | 0.66 | 0.76258 |
Target: 5'- aGGUGCCGGGCUuGAgCccGGAGG-CAc -3' miRNA: 3'- -CUACGGCCCGGuCUaGucCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 114209 | 0.67 | 0.705084 |
Target: 5'- --cGCCGGGCCGGA----GGGGGUa- -3' miRNA: 3'- cuaCGGCCCGGUCUagucCCUCCAgu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 64238 | 0.68 | 0.675421 |
Target: 5'- --cGCCuGGGCCGGggCGGGaGGGG-CGu -3' miRNA: 3'- cuaCGG-CCCGGUCuaGUCC-CUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 45542 | 0.68 | 0.655462 |
Target: 5'- cGUGaCCaGGGCCAGGcaGGGGAGGg-- -3' miRNA: 3'- cUAC-GG-CCCGGUCUagUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 147731 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 150809 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 153887 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 154035 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 150957 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 147879 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 144801 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 141723 | 0.66 | 0.798807 |
Target: 5'- gGggGCCGGGgaGGGaggCGGGGAGGaCAg -3' miRNA: 3'- -CuaCGGCCCggUCUa--GUCCCUCCaGU- -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 137206 | 0.66 | 0.798807 |
Target: 5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3' miRNA: 3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 137019 | 0.66 | 0.798807 |
Target: 5'- --gGCCGGGCaCAcccCGGGGAGGa-- -3' miRNA: 3'- cuaCGGCCCG-GUcuaGUCCCUCCagu -5' |
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29133 | 3' | -59.3 | NC_006146.1 | + | 156965 | 0.66 | 0.780949 |
Target: 5'- --aGCCGGgGCC---UCGGGGAGGg-- -3' miRNA: 3'- cuaCGGCC-CGGucuAGUCCCUCCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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