miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 5' -61.6 NC_006146.1 + 44665 0.68 0.543456
Target:  5'- gGGCGccuGGGUCCCaaaacggacgaugaUGcCGGUGUgGCGGCGg -3'
miRNA:   3'- -CCGU---UCCAGGG--------------GC-GCCGCAgCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 169740 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 93939 0.66 0.68228
Target:  5'- cGGCGGGG-CUCCGCucuccgucccaGGCGaccuccaGCGGCAg -3'
miRNA:   3'- -CCGUUCCaGGGGCG-----------CCGCag-----CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 169293 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 94030 0.68 0.575117
Target:  5'- cGGCAGGGgcacggCCCCGa-GCGcCGCcGCGu -3'
miRNA:   3'- -CCGUUCCa-----GGGGCgcCGCaGCGuCGU- -5'
29133 5' -61.6 NC_006146.1 + 168808 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 168361 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 167876 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 170679 0.71 0.403448
Target:  5'- aGGcCAGGGgcgCCCCGgGGacCGUCGCGGgGg -3'
miRNA:   3'- -CC-GUUCCa--GGGGCgCC--GCAGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 49476 0.68 0.604252
Target:  5'- uGGUGAGGg--CCGCGGUGUCggccagggGCGGCGu -3'
miRNA:   3'- -CCGUUCCaggGGCGCCGCAG--------CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 33083 0.66 0.691941
Target:  5'- uGGCucGG-CCCUGCGGC-UCugggGCAGCc -3'
miRNA:   3'- -CCGuuCCaGGGGCGCCGcAG----CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 137891 0.68 0.555868
Target:  5'- cGGCAggGGGUCCCCGUggacagggccgGGgGUUccggggGCAGCc -3'
miRNA:   3'- -CCGU--UCCAGGGGCG-----------CCgCAG------CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 146446 0.67 0.61401
Target:  5'- gGGCGAgugggcGGUCCacacaCGCGG-G-CGCAGCAc -3'
miRNA:   3'- -CCGUU------CCAGGg----GCGCCgCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 170224 0.67 0.623781
Target:  5'- cGCGGGGUCCCggggCGgGGgGUCG-GGCGg -3'
miRNA:   3'- cCGUUCCAGGG----GCgCCgCAGCgUCGU- -5'
29133 5' -61.6 NC_006146.1 + 43366 0.67 0.662851
Target:  5'- uGGCAGGGgguggCUuaGCGGgGgcaGCAGCGg -3'
miRNA:   3'- -CCGUUCCa----GGggCGCCgCag-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 52335 0.69 0.50867
Target:  5'- gGGcCGGGGUgCCCgggGCGGCGUCcuuuugGCAGUg -3'
miRNA:   3'- -CC-GUUCCAgGGG---CGCCGCAG------CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 150175 0.7 0.481171
Target:  5'- uGGCGcGGGUCCUCGCaGGCcgccaGCAGCu -3'
miRNA:   3'- -CCGU-UCCAGGGGCG-CCGcag--CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 56922 0.67 0.659928
Target:  5'- aGCGucacuauuuaauuuGGGUCCCCGCcuGGCcacgGCAGCAu -3'
miRNA:   3'- cCGU--------------UCCAGGGGCG--CCGcag-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 11628 0.69 0.490259
Target:  5'- uGCGAGGgCCCCgaggcccgcgugGCGGCGUUGCAcCGa -3'
miRNA:   3'- cCGUUCCaGGGG------------CGCCGCAGCGUcGU- -5'
29133 5' -61.6 NC_006146.1 + 77631 0.69 0.50867
Target:  5'- cGGCGAGGgcaaCCCCGCGaGCGgcuacaUCGUGGa- -3'
miRNA:   3'- -CCGUUCCa---GGGGCGC-CGC------AGCGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.