miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 5' -61.6 NC_006146.1 + 155131 1.1 0.000949
Target:  5'- gGGCAAGGUCCCCGCGGCGUCGCAGCAg -3'
miRNA:   3'- -CCGUUCCAGGGGCGCCGCAGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 137891 0.68 0.555868
Target:  5'- cGGCAggGGGUCCCCGUggacagggccgGGgGUUccggggGCAGCc -3'
miRNA:   3'- -CCGU--UCCAGGGGCG-----------CCgCAG------CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 94030 0.68 0.575117
Target:  5'- cGGCAGGGgcacggCCCCGa-GCGcCGCcGCGu -3'
miRNA:   3'- -CCGUUCCa-----GGGGCgcCGCaGCGuCGU- -5'
29133 5' -61.6 NC_006146.1 + 44864 0.66 0.700598
Target:  5'- uGGC-GGGUCCCCGCugagaagccccugGGC-UCGCgauGGUAc -3'
miRNA:   3'- -CCGuUCCAGGGGCG-------------CCGcAGCG---UCGU- -5'
29133 5' -61.6 NC_006146.1 + 169053 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 169985 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 170679 0.71 0.403448
Target:  5'- aGGcCAGGGgcgCCCCGgGGacCGUCGCGGgGg -3'
miRNA:   3'- -CC-GUUCCa--GGGGCgCC--GCAGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 167876 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 150175 0.7 0.481171
Target:  5'- uGGCGcGGGUCCUCGCaGGCcgccaGCAGCu -3'
miRNA:   3'- -CCGU-UCCAGGGGCG-CCGcag--CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 44665 0.68 0.543456
Target:  5'- gGGCGccuGGGUCCCaaaacggacgaugaUGcCGGUGUgGCGGCGg -3'
miRNA:   3'- -CCGU---UCCAGGG--------------GC-GCCGCAgCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 66269 0.69 0.503115
Target:  5'- gGGCAGGGUCUCgCG-GGUccuccugaucagauaGUCGCGGCc -3'
miRNA:   3'- -CCGUUCCAGGG-GCgCCG---------------CAGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 169740 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 126808 0.74 0.286558
Target:  5'- gGGCcugGAGGUUUCCGCGGCGUUGguauuuaaaaacCAGCGu -3'
miRNA:   3'- -CCG---UUCCAGGGGCGCCGCAGC------------GUCGU- -5'
29133 5' -61.6 NC_006146.1 + 52335 0.69 0.50867
Target:  5'- gGGcCGGGGUgCCCgggGCGGCGUCcuuuugGCAGUg -3'
miRNA:   3'- -CC-GUUCCAgGGG---CGCCGCAG------CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 167189 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 168808 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 56817 0.69 0.524545
Target:  5'- gGGCGGGGcuucuggCCCCcgaggcggccucugGCGGCGgggGCGGCAg -3'
miRNA:   3'- -CCGUUCCa------GGGG--------------CGCCGCag-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 132778 0.68 0.565471
Target:  5'- cGCAcGGUCgCUGCaGGC-UCGCAGCu -3'
miRNA:   3'- cCGUuCCAGgGGCG-CCGcAGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 168121 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 57342 0.73 0.334151
Target:  5'- gGGCGGGG-CCCCG-GGUGUCGguGa- -3'
miRNA:   3'- -CCGUUCCaGGGGCgCCGCAGCguCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.