miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 5' -61.6 NC_006146.1 + 155131 1.1 0.000949
Target:  5'- gGGCAAGGUCCCCGCGGCGUCGCAGCAg -3'
miRNA:   3'- -CCGUUCCAGGGGCGCCGCAGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 40437 0.74 0.280212
Target:  5'- cGGCAGcGG-CCCCGUaGGCGggUGCGGCAa -3'
miRNA:   3'- -CCGUU-CCaGGGGCG-CCGCa-GCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 126808 0.74 0.286558
Target:  5'- gGGCcugGAGGUUUCCGCGGCGUUGguauuuaaaaacCAGCGu -3'
miRNA:   3'- -CCG---UUCCAGGGGCGCCGCAGC------------GUCGU- -5'
29133 5' -61.6 NC_006146.1 + 167189 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 169985 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 169053 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 168121 0.73 0.327011
Target:  5'- cGGCGcgcgcccgGGGUCCCgggggGCGGCG-CGCGGCc -3'
miRNA:   3'- -CCGU--------UCCAGGGg----CGCCGCaGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 57342 0.73 0.334151
Target:  5'- gGGCGGGG-CCCCG-GGUGUCGguGa- -3'
miRNA:   3'- -CCGUUCCaGGGGCgCCGCAGCguCgu -5'
29133 5' -61.6 NC_006146.1 + 137721 0.72 0.379358
Target:  5'- aGGCcAGGaCCgaGCGGCGgCGCGGCGg -3'
miRNA:   3'- -CCGuUCCaGGggCGCCGCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 24025 0.71 0.38728
Target:  5'- cGGCGAGGcgucgUCCCCcugGCGGgGUgaCGCGGCc -3'
miRNA:   3'- -CCGUUCC-----AGGGG---CGCCgCA--GCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 170679 0.71 0.403448
Target:  5'- aGGcCAGGGgcgCCCCGgGGacCGUCGCGGgGg -3'
miRNA:   3'- -CC-GUUCCa--GGGGCgCC--GCAGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 167876 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 168808 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 169740 0.7 0.445675
Target:  5'- cGCGGGGgagCCCCGgGGCGgcccggggacccUCGCGGgGg -3'
miRNA:   3'- cCGUUCCa--GGGGCgCCGC------------AGCGUCgU- -5'
29133 5' -61.6 NC_006146.1 + 100029 0.7 0.463245
Target:  5'- cGGCGGGGU--CCGCGGCuucUCGCGGUc -3'
miRNA:   3'- -CCGUUCCAggGGCGCCGc--AGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 150175 0.7 0.481171
Target:  5'- uGGCGcGGGUCCUCGCaGGCcgccaGCAGCu -3'
miRNA:   3'- -CCGU-UCCAGGGGCG-CCGcag--CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 53786 0.69 0.490259
Target:  5'- cGGaCGAGGgccucggCCCgCGCGGCGUCcaUAGCGg -3'
miRNA:   3'- -CC-GUUCCa------GGG-GCGCCGCAGc-GUCGU- -5'
29133 5' -61.6 NC_006146.1 + 11628 0.69 0.490259
Target:  5'- uGCGAGGgCCCCgaggcccgcgugGCGGCGUUGCAcCGa -3'
miRNA:   3'- cCGUUCCaGGGG------------CGCCGCAGCGUcGU- -5'
29133 5' -61.6 NC_006146.1 + 66269 0.69 0.503115
Target:  5'- gGGCAGGGUCUCgCG-GGUccuccugaucagauaGUCGCGGCc -3'
miRNA:   3'- -CCGUUCCAGGG-GCgCCG---------------CAGCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 77631 0.69 0.50867
Target:  5'- cGGCGAGGgcaaCCCCGCGaGCGgcuacaUCGUGGa- -3'
miRNA:   3'- -CCGUUCCa---GGGGCGC-CGC------AGCGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.