miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29133 5' -61.6 NC_006146.1 + 219 0.66 0.71112
Target:  5'- cGCGAcGGUCCCCGgGGCGcCcCuGGCc -3'
miRNA:   3'- cCGUU-CCAGGGGCgCCGCaGcG-UCGu -5'
29133 5' -61.6 NC_006146.1 + 11628 0.69 0.490259
Target:  5'- uGCGAGGgCCCCgaggcccgcgugGCGGCGUUGCAcCGa -3'
miRNA:   3'- cCGUUCCaGGGG------------CGCCGCAGCGUcGU- -5'
29133 5' -61.6 NC_006146.1 + 15554 0.67 0.657002
Target:  5'- aGGCGggccuucgucucGGGUCCCUGggaggacaggcgcguCGGCGagggCGCGGCc -3'
miRNA:   3'- -CCGU------------UCCAGGGGC---------------GCCGCa---GCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 21421 0.66 0.691941
Target:  5'- gGGCAGGGUCCCCaUGGgGgaGCucuGCu -3'
miRNA:   3'- -CCGUUCCAGGGGcGCCgCagCGu--CGu -5'
29133 5' -61.6 NC_006146.1 + 24025 0.71 0.38728
Target:  5'- cGGCGAGGcgucgUCCCCcugGCGGgGUgaCGCGGCc -3'
miRNA:   3'- -CCGUUCC-----AGGGG---CGCCgCA--GCGUCGu -5'
29133 5' -61.6 NC_006146.1 + 27358 0.69 0.517985
Target:  5'- cGGCAAGG-CCggGgGGCGUCuggacaGCAGCAa -3'
miRNA:   3'- -CCGUUCCaGGggCgCCGCAG------CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 31824 0.66 0.68228
Target:  5'- aGGCGAGG--CCCGUGGCcaaaGUC-CAGCu -3'
miRNA:   3'- -CCGUUCCagGGGCGCCG----CAGcGUCGu -5'
29133 5' -61.6 NC_006146.1 + 32037 0.66 0.710166
Target:  5'- aGGCGcuggcccAGGUCaugaCCCG-GGCGUgGCgAGCAu -3'
miRNA:   3'- -CCGU-------UCCAG----GGGCgCCGCAgCG-UCGU- -5'
29133 5' -61.6 NC_006146.1 + 32878 0.68 0.555868
Target:  5'- cGCGAGGUCCCUGCcuGGCaccaggGUC-CGGCu -3'
miRNA:   3'- cCGUUCCAGGGGCG--CCG------CAGcGUCGu -5'
29133 5' -61.6 NC_006146.1 + 33083 0.66 0.691941
Target:  5'- uGGCucGG-CCCUGCGGC-UCugggGCAGCc -3'
miRNA:   3'- -CCGuuCCaGGGGCGCCGcAG----CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 40374 0.66 0.68228
Target:  5'- aGGCccccuGGUCgCCGCccGGCG-CGUAGUAg -3'
miRNA:   3'- -CCGuu---CCAGgGGCG--CCGCaGCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 40437 0.74 0.280212
Target:  5'- cGGCAGcGG-CCCCGUaGGCGggUGCGGCAa -3'
miRNA:   3'- -CCGUU-CCaGGGGCG-CCGCa-GCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 42717 0.69 0.51705
Target:  5'- cGGCGccccccuGGGccgCCUCcCGGCGUCGCuGCAu -3'
miRNA:   3'- -CCGU-------UCCa--GGGGcGCCGCAGCGuCGU- -5'
29133 5' -61.6 NC_006146.1 + 43366 0.67 0.662851
Target:  5'- uGGCAGGGgguggCUuaGCGGgGgcaGCAGCGg -3'
miRNA:   3'- -CCGUUCCa----GGggCGCCgCag-CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 44665 0.68 0.543456
Target:  5'- gGGCGccuGGGUCCCaaaacggacgaugaUGcCGGUGUgGCGGCGg -3'
miRNA:   3'- -CCGU---UCCAGGG--------------GC-GCCGCAgCGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 44864 0.66 0.700598
Target:  5'- uGGC-GGGUCCCCGCugagaagccccugGGC-UCGCgauGGUAc -3'
miRNA:   3'- -CCGuUCCAGGGGCG-------------CCGcAGCG---UCGU- -5'
29133 5' -61.6 NC_006146.1 + 49476 0.68 0.604252
Target:  5'- uGGUGAGGg--CCGCGGUGUCggccagggGCGGCGu -3'
miRNA:   3'- -CCGUUCCaggGGCGCCGCAG--------CGUCGU- -5'
29133 5' -61.6 NC_006146.1 + 52335 0.69 0.50867
Target:  5'- gGGcCGGGGUgCCCgggGCGGCGUCcuuuugGCAGUg -3'
miRNA:   3'- -CC-GUUCCAgGGG---CGCCGCAG------CGUCGu -5'
29133 5' -61.6 NC_006146.1 + 53786 0.69 0.490259
Target:  5'- cGGaCGAGGgccucggCCCgCGCGGCGUCcaUAGCGg -3'
miRNA:   3'- -CC-GUUCCa------GGG-GCGCCGCAGc-GUCGU- -5'
29133 5' -61.6 NC_006146.1 + 55275 0.67 0.623781
Target:  5'- cGGCucguGGGg-CUCGCGGUGg-GCAGCAg -3'
miRNA:   3'- -CCGu---UCCagGGGCGCCGCagCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.