Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29134 | 5' | -63.1 | NC_006146.1 | + | 2417 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 3349 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 14059 | 0.66 | 0.643497 |
Target: 5'- -aGCGCCggcuggcugcgGUCCUCCCGGGu-CUgGAg -3' miRNA: 3'- ugCGCGGa----------CAGGAGGGUCCcuGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 137238 | 0.66 | 0.643497 |
Target: 5'- -gGgGCCUGgggUCCCGGGGACCa-- -3' miRNA: 3'- ugCgCGGACaggAGGGUCCCUGGgcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 123571 | 0.66 | 0.649295 |
Target: 5'- -gGCGCCUGgcccggcuggaggCCaucaUCCAGGaGGCCCGGg -3' miRNA: 3'- ugCGCGGACa------------GGa---GGGUCC-CUGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 78942 | 0.66 | 0.624156 |
Target: 5'- cCGUuuGCUUGUCCUCCguggUAGGGGuCCUGGc -3' miRNA: 3'- uGCG--CGGACAGGAGG----GUCCCU-GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 129624 | 0.66 | 0.604838 |
Target: 5'- cCGuCGCCggGUCCUCCgCGGGcGcgugcuccGCCCGGg -3' miRNA: 3'- uGC-GCGGa-CAGGAGG-GUCC-C--------UGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 42551 | 0.66 | 0.621256 |
Target: 5'- -gGgGCCUGUCCguccgucggcuucaUCuCCAGGGccagcaggaccaGCCCGGg -3' miRNA: 3'- ugCgCGGACAGG--------------AG-GGUCCC------------UGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 136706 | 0.66 | 0.614491 |
Target: 5'- gGCGCGaggucCCUG-CCUggCCCAGGG-UCCGGc -3' miRNA: 3'- -UGCGC-----GGACaGGA--GGGUCCCuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 113708 | 0.66 | 0.614491 |
Target: 5'- -gGUGCUcuugaUGUUCUCCaccaGGGGGCCCa- -3' miRNA: 3'- ugCGCGG-----ACAGGAGGg---UCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 155744 | 0.67 | 0.573143 |
Target: 5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3' miRNA: 3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 149589 | 0.67 | 0.573143 |
Target: 5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3' miRNA: 3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 146511 | 0.67 | 0.573143 |
Target: 5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3' miRNA: 3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 41404 | 0.67 | 0.585592 |
Target: 5'- gUGgGCCugaUGUCCgCCUGGGGggcACCCGAg -3' miRNA: 3'- uGCgCGG---ACAGGaGGGUCCC---UGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 152667 | 0.67 | 0.565513 |
Target: 5'- uUGUGCCUGcgCCUUCUcaggaggucucgaAGGGGCCCuGAg -3' miRNA: 3'- uGCGCGGACa-GGAGGG-------------UCCCUGGG-CU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 143433 | 0.67 | 0.573143 |
Target: 5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3' miRNA: 3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 76386 | 0.67 | 0.57601 |
Target: 5'- gGCGCGCCgggGgagggaCCGGGGGCgCCGAc -3' miRNA: 3'- -UGCGCGGa--Caggag-GGUCCCUG-GGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2798 | 0.68 | 0.519456 |
Target: 5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3' miRNA: 3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 1134 | 0.68 | 0.501075 |
Target: 5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3' miRNA: 3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2998 | 0.68 | 0.501075 |
Target: 5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3' miRNA: 3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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