Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29134 | 5' | -63.1 | NC_006146.1 | + | 115246 | 0.66 | 0.649295 |
Target: 5'- aACGcCGCCUGgcUCCggcugcugcacccCUCGGGGGCCCu- -3' miRNA: 3'- -UGC-GCGGAC--AGGa------------GGGUCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 113708 | 0.66 | 0.614491 |
Target: 5'- -gGUGCUcuugaUGUUCUCCaccaGGGGGCCCa- -3' miRNA: 3'- ugCGCGG-----ACAGGAGGg---UCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 129624 | 0.66 | 0.604838 |
Target: 5'- cCGuCGCCggGUCCUCCgCGGGcGcgugcuccGCCCGGg -3' miRNA: 3'- uGC-GCGGa-CAGGAGG-GUCC-C--------UGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 136817 | 0.66 | 0.604838 |
Target: 5'- uCGCGgCUG-CC-CCCcGGGACCCc- -3' miRNA: 3'- uGCGCgGACaGGaGGGuCCCUGGGcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 167813 | 0.66 | 0.604838 |
Target: 5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3' miRNA: 3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 168745 | 0.66 | 0.604838 |
Target: 5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3' miRNA: 3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 169677 | 0.66 | 0.604838 |
Target: 5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3' miRNA: 3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 167692 | 0.66 | 0.604838 |
Target: 5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3' miRNA: 3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 168625 | 0.66 | 0.604838 |
Target: 5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3' miRNA: 3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 136706 | 0.66 | 0.614491 |
Target: 5'- gGCGCGaggucCCUG-CCUggCCCAGGG-UCCGGc -3' miRNA: 3'- -UGCGC-----GGACaGGA--GGGUCCCuGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 42551 | 0.66 | 0.621256 |
Target: 5'- -gGgGCCUGUCCguccgucggcuucaUCuCCAGGGccagcaggaccaGCCCGGg -3' miRNA: 3'- ugCgCGGACAGG--------------AG-GGUCCC------------UGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 78942 | 0.66 | 0.624156 |
Target: 5'- cCGUuuGCUUGUCCUCCguggUAGGGGuCCUGGc -3' miRNA: 3'- uGCG--CGGACAGGAGG----GUCCCU-GGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 123571 | 0.66 | 0.649295 |
Target: 5'- -gGCGCCUGgcccggcuggaggCCaucaUCCAGGaGGCCCGGg -3' miRNA: 3'- ugCGCGGACa------------GGa---GGGUCC-CUGGGCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 137238 | 0.66 | 0.643497 |
Target: 5'- -gGgGCCUGgggUCCCGGGGACCa-- -3' miRNA: 3'- ugCgCGGACaggAGGGUCCCUGGgcu -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 14059 | 0.66 | 0.643497 |
Target: 5'- -aGCGCCggcuggcugcgGUCCUCCCGGGu-CUgGAg -3' miRNA: 3'- ugCGCGGa----------CAGGAGGGUCCcuGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 3349 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 2417 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 1485 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 554 | 0.66 | 0.643497 |
Target: 5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3' miRNA: 3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5' |
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29134 | 5' | -63.1 | NC_006146.1 | + | 262 | 0.66 | 0.633827 |
Target: 5'- uGCGCGCCcacCCgugagggggagCCCGGGaaGACCCGGg -3' miRNA: 3'- -UGCGCGGacaGGa----------GGGUCC--CUGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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