miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 5' -63.1 NC_006146.1 + 262 0.66 0.633827
Target:  5'- uGCGCGCCcacCCgugagggggagCCCGGGaaGACCCGGg -3'
miRNA:   3'- -UGCGCGGacaGGa----------GGGUCC--CUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 554 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 908 0.71 0.329895
Target:  5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3'
miRNA:   3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 934 0.68 0.519456
Target:  5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3'
miRNA:   3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 1134 0.68 0.501075
Target:  5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3'
miRNA:   3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 1485 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 1840 0.71 0.329895
Target:  5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3'
miRNA:   3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 1866 0.68 0.519456
Target:  5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3'
miRNA:   3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 2066 0.68 0.501075
Target:  5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3'
miRNA:   3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 2417 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 2772 0.71 0.329895
Target:  5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3'
miRNA:   3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 2798 0.68 0.519456
Target:  5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3'
miRNA:   3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 2998 0.68 0.501075
Target:  5'- cACGCGCCgGUgCC-CCCgcgAGGGucCCCGGg -3'
miRNA:   3'- -UGCGCGGaCA-GGaGGG---UCCCu-GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 3349 0.66 0.643497
Target:  5'- cGCGgGCCUccacacguggCCUCCCaggagAGGGGCCgGGg -3'
miRNA:   3'- -UGCgCGGAca--------GGAGGG-----UCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 3704 0.71 0.329895
Target:  5'- cGCGCGCCg--CC-CCCcGGGACCCc- -3'
miRNA:   3'- -UGCGCGGacaGGaGGGuCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 3730 0.68 0.519456
Target:  5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3'
miRNA:   3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 4941 0.68 0.482987
Target:  5'- cCGUGCuCUGUgC-CCCGGGGACCaGGg -3'
miRNA:   3'- uGCGCG-GACAgGaGGGUCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 9464 0.66 0.624157
Target:  5'- cACGCGCCuUGggUUCCCGcGGGGCCa-- -3'
miRNA:   3'- -UGCGCGG-ACagGAGGGU-CCCUGGgcu -5'
29134 5' -63.1 NC_006146.1 + 9793 0.73 0.270922
Target:  5'- -aGCGUCUGcUCCUCuCCAGGG-CCCa- -3'
miRNA:   3'- ugCGCGGAC-AGGAG-GGUCCCuGGGcu -5'
29134 5' -63.1 NC_006146.1 + 14059 0.66 0.643497
Target:  5'- -aGCGCCggcuggcugcgGUCCUCCCGGGu-CUgGAg -3'
miRNA:   3'- ugCGCGGa----------CAGGAGGGUCCcuGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.