miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 5' -63.1 NC_006146.1 + 155332 1.08 0.000972
Target:  5'- gACGCGCCUGUCCUCCCAGGGACCCGAg -3'
miRNA:   3'- -UGCGCGGACAGGAGGGUCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 167650 0.66 0.633827
Target:  5'- -gGCGCgUG-CCgggggCCCGGGGgcgugucccgcgACCCGAg -3'
miRNA:   3'- ugCGCGgACaGGa----GGGUCCC------------UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 156700 0.66 0.64253
Target:  5'- uGCGCGCCaccgCCUCCCcguccaggcuccgGGGGuccaGCCUGGc -3'
miRNA:   3'- -UGCGCGGaca-GGAGGG-------------UCCC----UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 43326 0.66 0.643497
Target:  5'- gGCGCgGCCUcggCCgCCCAGGGccagcaggcgcaGCCCGu -3'
miRNA:   3'- -UGCG-CGGAca-GGaGGGUCCC------------UGGGCu -5'
29134 5' -63.1 NC_006146.1 + 49690 0.68 0.519456
Target:  5'- -gGCGUC-GUCCUCcuccacccucuCCAGGGGCCaCGGa -3'
miRNA:   3'- ugCGCGGaCAGGAG-----------GGUCCCUGG-GCU- -5'
29134 5' -63.1 NC_006146.1 + 41404 0.67 0.585592
Target:  5'- gUGgGCCugaUGUCCgCCUGGGGggcACCCGAg -3'
miRNA:   3'- uGCgCGG---ACAGGaGGGUCCC---UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 168745 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 169677 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 169557 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 150711 0.66 0.633827
Target:  5'- -aGCcuCCUGcgCC-CCCGGGGGCCCu- -3'
miRNA:   3'- ugCGc-GGACa-GGaGGGUCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 9464 0.66 0.624157
Target:  5'- cACGCGCCuUGggUUCCCGcGGGGCCa-- -3'
miRNA:   3'- -UGCGCGG-ACagGAGGGU-CCCUGGgcu -5'
29134 5' -63.1 NC_006146.1 + 168625 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 137969 0.81 0.077372
Target:  5'- uCGCgGCCgggCCUCCCGGGGGCCCGGc -3'
miRNA:   3'- uGCG-CGGacaGGAGGGUCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 48229 0.66 0.624157
Target:  5'- gGCGCGCCUGggugagcgCCgCgCGGaGGGCCCc- -3'
miRNA:   3'- -UGCGCGGACa-------GGaGgGUC-CCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 170609 0.69 0.477621
Target:  5'- aGCGCGCCgggcccgcccccggGUCUUCCCGGGcuCCCc- -3'
miRNA:   3'- -UGCGCGGa-------------CAGGAGGGUCCcuGGGcu -5'
29134 5' -63.1 NC_006146.1 + 167692 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 33306 0.66 0.633827
Target:  5'- uGCGcCGCCgcucgGUCCUggggcUCCGGGG-UCCGGg -3'
miRNA:   3'- -UGC-GCGGa----CAGGA-----GGGUCCCuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 66411 0.66 0.633827
Target:  5'- cUGCGCUUGUCCUCCUcuuccGGGuGACa-GAc -3'
miRNA:   3'- uGCGCGGACAGGAGGG-----UCC-CUGggCU- -5'
29134 5' -63.1 NC_006146.1 + 4941 0.68 0.482987
Target:  5'- cCGUGCuCUGUgC-CCCGGGGACCaGGg -3'
miRNA:   3'- uGCGCG-GACAgGaGGGUCCCUGGgCU- -5'
29134 5' -63.1 NC_006146.1 + 167813 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.