miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 5' -63.1 NC_006146.1 + 170609 0.69 0.477621
Target:  5'- aGCGCGCCgggcccgcccccggGUCUUCCCGGGcuCCCc- -3'
miRNA:   3'- -UGCGCGGa-------------CAGGAGGGUCCcuGGGcu -5'
29134 5' -63.1 NC_006146.1 + 169677 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 169557 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 168745 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 168625 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 167813 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 167692 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 167650 0.66 0.633827
Target:  5'- -gGCGCgUG-CCgggggCCCGGGGgcgugucccgcgACCCGAg -3'
miRNA:   3'- ugCGCGgACaGGa----GGGUCCC------------UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 156700 0.66 0.64253
Target:  5'- uGCGCGCCaccgCCUCCCcguccaggcuccgGGGGuccaGCCUGGc -3'
miRNA:   3'- -UGCGCGGaca-GGAGGG-------------UCCC----UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 155744 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 155332 1.08 0.000972
Target:  5'- gACGCGCCUGUCCUCCCAGGGACCCGAg -3'
miRNA:   3'- -UGCGCGGACAGGAGGGUCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 152667 0.67 0.565513
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucucgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG-------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 150711 0.66 0.633827
Target:  5'- -aGCcuCCUGcgCC-CCCGGGGGCCCu- -3'
miRNA:   3'- ugCGc-GGACa-GGaGGGUCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 149589 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 146511 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 143433 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 137969 0.81 0.077372
Target:  5'- uCGCgGCCgggCCUCCCGGGGGCCCGGc -3'
miRNA:   3'- uGCG-CGGacaGGAGGGUCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 137238 0.66 0.643497
Target:  5'- -gGgGCCUGgggUCCCGGGGACCa-- -3'
miRNA:   3'- ugCgCGGACaggAGGGUCCCUGGgcu -5'
29134 5' -63.1 NC_006146.1 + 136817 0.66 0.604838
Target:  5'- uCGCGgCUG-CC-CCCcGGGACCCc- -3'
miRNA:   3'- uGCGCgGACaGGaGGGuCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 136706 0.66 0.614491
Target:  5'- gGCGCGaggucCCUG-CCUggCCCAGGG-UCCGGc -3'
miRNA:   3'- -UGCGC-----GGACaGGA--GGGUCCCuGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.