miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29134 5' -63.1 NC_006146.1 + 136706 0.66 0.614491
Target:  5'- gGCGCGaggucCCUG-CCUggCCCAGGG-UCCGGc -3'
miRNA:   3'- -UGCGC-----GGACaGGA--GGGUCCCuGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 99113 0.66 0.613526
Target:  5'- cCGCGCCUGcccUCCggccucaggcgucUCCaCAGGGGCuCCa- -3'
miRNA:   3'- uGCGCGGAC---AGG-------------AGG-GUCCCUG-GGcu -5'
29134 5' -63.1 NC_006146.1 + 168745 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 129624 0.66 0.604838
Target:  5'- cCGuCGCCggGUCCUCCgCGGGcGcgugcuccGCCCGGg -3'
miRNA:   3'- uGC-GCGGa-CAGGAGG-GUCC-C--------UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 136817 0.66 0.604838
Target:  5'- uCGCGgCUG-CC-CCCcGGGACCCc- -3'
miRNA:   3'- uGCGCgGACaGGaGGGuCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 167813 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 169677 0.66 0.604838
Target:  5'- gGCGCGCgUGgcccgCC-CCCGGGucuuCCCGGg -3'
miRNA:   3'- -UGCGCGgACa----GGaGGGUCCcu--GGGCU- -5'
29134 5' -63.1 NC_006146.1 + 168625 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 169557 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 167692 0.66 0.604838
Target:  5'- gGCGaGCggGgggCUUCCCcGGGGCCCGAg -3'
miRNA:   3'- -UGCgCGgaCa--GGAGGGuCCCUGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 41404 0.67 0.585592
Target:  5'- gUGgGCCugaUGUCCgCCUGGGGggcACCCGAg -3'
miRNA:   3'- uGCgCGG---ACAGGaGGGUCCC---UGGGCU- -5'
29134 5' -63.1 NC_006146.1 + 76386 0.67 0.57601
Target:  5'- gGCGCGCCgggGgagggaCCGGGGGCgCCGAc -3'
miRNA:   3'- -UGCGCGGa--Caggag-GGUCCCUG-GGCU- -5'
29134 5' -63.1 NC_006146.1 + 155744 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 143433 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 146511 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 149589 0.67 0.573143
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucuccgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG--------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 152667 0.67 0.565513
Target:  5'- uUGUGCCUGcgCCUUCUcaggaggucucgaAGGGGCCCuGAg -3'
miRNA:   3'- uGCGCGGACa-GGAGGG-------------UCCCUGGG-CU- -5'
29134 5' -63.1 NC_006146.1 + 63687 0.68 0.528746
Target:  5'- cACGCGCUUGgcaucaaaguUCUUUgCCAGGGugUCGAu -3'
miRNA:   3'- -UGCGCGGAC----------AGGAG-GGUCCCugGGCU- -5'
29134 5' -63.1 NC_006146.1 + 124463 0.68 0.519456
Target:  5'- uACGcCGCCgc-CUUCCUGGGGGCCCc- -3'
miRNA:   3'- -UGC-GCGGacaGGAGGGUCCCUGGGcu -5'
29134 5' -63.1 NC_006146.1 + 2798 0.68 0.519456
Target:  5'- cGCGCGCCgg-CCUCCCGu---CCCGAa -3'
miRNA:   3'- -UGCGCGGacaGGAGGGUcccuGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.