Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29136 | 5' | -55.1 | NC_006146.1 | + | 156389 | 1.12 | 0.002141 |
Target: 5'- uCUCCAGCCCCAUGCUGUGAGACAUGCa -3' miRNA: 3'- -GAGGUCGGGGUACGACACUCUGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 161006 | 0.78 | 0.340674 |
Target: 5'- -cUCAGCCCCAUGCcGUGuG-CAUGCg -3' miRNA: 3'- gaGGUCGGGGUACGaCACuCuGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 66349 | 0.76 | 0.44183 |
Target: 5'- -gCCAGCCCaCGUGCaGgGAGugAUGCa -3' miRNA: 3'- gaGGUCGGG-GUACGaCaCUCugUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 164624 | 0.74 | 0.517931 |
Target: 5'- aUUCAGCCCCGUGCUGUGAu------ -3' miRNA: 3'- gAGGUCGGGGUACGACACUcuguacg -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 34149 | 0.74 | 0.517931 |
Target: 5'- cCUCCcggAGCCCCG-GCgaggGUGGGGgGUGCg -3' miRNA: 3'- -GAGG---UCGGGGUaCGa---CACUCUgUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 101060 | 0.74 | 0.557911 |
Target: 5'- cCUCCcgagggccacGGgCUCAUGCUGUGGGGCA-GCa -3' miRNA: 3'- -GAGG----------UCgGGGUACGACACUCUGUaCG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 18845 | 0.72 | 0.629609 |
Target: 5'- uUCCAGaCCCCggGCgcugccgggGUGguGGACGUGCg -3' miRNA: 3'- gAGGUC-GGGGuaCGa--------CAC--UCUGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 155199 | 0.72 | 0.654344 |
Target: 5'- uCUCCucggccaguGGCCCCGUgaugaagguguacagGCUGUGggucaGGGCGUGCa -3' miRNA: 3'- -GAGG---------UCGGGGUA---------------CGACAC-----UCUGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 44108 | 0.72 | 0.664626 |
Target: 5'- cCUCCAGgCCCcgGCUGcccgGcgaggagggggggcaGGACGUGCg -3' miRNA: 3'- -GAGGUCgGGGuaCGACa---C---------------UCUGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 128458 | 0.7 | 0.741252 |
Target: 5'- -cCCGGCCgCCAUGCUG-GcGGCGcGCa -3' miRNA: 3'- gaGGUCGG-GGUACGACaCuCUGUaCG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 136838 | 0.69 | 0.82445 |
Target: 5'- -cCCGGCCCCGUGCcacGGGACccccgGCc -3' miRNA: 3'- gaGGUCGGGGUACGacaCUCUGua---CG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 117095 | 0.69 | 0.82445 |
Target: 5'- uUCCAGCCCCccGCUaUG-GACGccGCg -3' miRNA: 3'- gAGGUCGGGGuaCGAcACuCUGUa-CG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 3121 | 0.68 | 0.841207 |
Target: 5'- aUCCGGCaCCGUGCgucucGAGcCAUGCg -3' miRNA: 3'- gAGGUCGgGGUACGaca--CUCuGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 146621 | 0.68 | 0.8493 |
Target: 5'- gUCCAGCCCCcgGCcaggGUcacGAGGCcUGg -3' miRNA: 3'- gAGGUCGGGGuaCGa---CA---CUCUGuACg -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 158282 | 0.68 | 0.856413 |
Target: 5'- -cCCAGCCCCggGUUGUcauucucGuAGcACAUGCa -3' miRNA: 3'- gaGGUCGGGGuaCGACA-------C-UC-UGUACG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 116686 | 0.68 | 0.857193 |
Target: 5'- gCUCCcGCCCCAUcCUGUacgaugcgGAGACcggGCa -3' miRNA: 3'- -GAGGuCGGGGUAcGACA--------CUCUGua-CG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 48948 | 0.67 | 0.893443 |
Target: 5'- -aCCAGCCUCAgggaGUUGUGGGAgCGauugGCg -3' miRNA: 3'- gaGGUCGGGGUa---CGACACUCU-GUa---CG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 161840 | 0.67 | 0.900014 |
Target: 5'- -gCCAcGCCCCGUGg---GAGACcgGCu -3' miRNA: 3'- gaGGU-CGGGGUACgacaCUCUGuaCG- -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 35975 | 0.67 | 0.900014 |
Target: 5'- cCUCCAGCCUCucUGCgg-GGGACAc-- -3' miRNA: 3'- -GAGGUCGGGGu-ACGacaCUCUGUacg -5' |
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29136 | 5' | -55.1 | NC_006146.1 | + | 153450 | 0.67 | 0.90635 |
Target: 5'- -cCCGGCCCUAgacaggGCUGUcuGACAgGCc -3' miRNA: 3'- gaGGUCGGGGUa-----CGACAcuCUGUaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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