miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29136 5' -55.1 NC_006146.1 + 2662 0.66 0.91599
Target:  5'- aUCCAGCCCaacugcccucaGCUGUuuauGAGACG-GCa -3'
miRNA:   3'- gAGGUCGGGgua--------CGACA----CUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 3121 0.68 0.841207
Target:  5'- aUCCGGCaCCGUGCgucucGAGcCAUGCg -3'
miRNA:   3'- gAGGUCGgGGUACGaca--CUCuGUACG- -5'
29136 5' -55.1 NC_006146.1 + 5236 0.66 0.943954
Target:  5'- -gCCGGCCUCGggGCUGUGGGGu---- -3'
miRNA:   3'- gaGGUCGGGGUa-CGACACUCUguacg -5'
29136 5' -55.1 NC_006146.1 + 11544 0.66 0.943954
Target:  5'- -gUCAGCUacgcccccgCCAUGCUG-GAGGCG-GCg -3'
miRNA:   3'- gaGGUCGG---------GGUACGACaCUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 18845 0.72 0.629609
Target:  5'- uUCCAGaCCCCggGCgcugccgggGUGguGGACGUGCg -3'
miRNA:   3'- gAGGUC-GGGGuaCGa--------CAC--UCUGUACG- -5'
29136 5' -55.1 NC_006146.1 + 34149 0.74 0.517931
Target:  5'- cCUCCcggAGCCCCG-GCgaggGUGGGGgGUGCg -3'
miRNA:   3'- -GAGG---UCGGGGUaCGa---CACUCUgUACG- -5'
29136 5' -55.1 NC_006146.1 + 35975 0.67 0.900014
Target:  5'- cCUCCAGCCUCucUGCgg-GGGACAc-- -3'
miRNA:   3'- -GAGGUCGGGGu-ACGacaCUCUGUacg -5'
29136 5' -55.1 NC_006146.1 + 44108 0.72 0.664626
Target:  5'- cCUCCAGgCCCcgGCUGcccgGcgaggagggggggcaGGACGUGCg -3'
miRNA:   3'- -GAGGUCgGGGuaCGACa---C---------------UCUGUACG- -5'
29136 5' -55.1 NC_006146.1 + 48948 0.67 0.893443
Target:  5'- -aCCAGCCUCAgggaGUUGUGGGAgCGauugGCg -3'
miRNA:   3'- gaGGUCGGGGUa---CGACACUCU-GUa---CG- -5'
29136 5' -55.1 NC_006146.1 + 51924 0.66 0.939307
Target:  5'- -cCCAGCUCCuccuuaCcGUGAGACAUGg -3'
miRNA:   3'- gaGGUCGGGGuac---GaCACUCUGUACg -5'
29136 5' -55.1 NC_006146.1 + 66349 0.76 0.44183
Target:  5'- -gCCAGCCCaCGUGCaGgGAGugAUGCa -3'
miRNA:   3'- gaGGUCGGG-GUACGaCaCUCugUACG- -5'
29136 5' -55.1 NC_006146.1 + 72583 0.67 0.912447
Target:  5'- -cCCGGCCCCGUGCc---AGACG-GCc -3'
miRNA:   3'- gaGGUCGGGGUACGacacUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 85093 0.66 0.923918
Target:  5'- -aCCAGCCUccccagugauguCAUGgUuUGGGACGUGCc -3'
miRNA:   3'- gaGGUCGGG------------GUACgAcACUCUGUACG- -5'
29136 5' -55.1 NC_006146.1 + 101060 0.74 0.557911
Target:  5'- cCUCCcgagggccacGGgCUCAUGCUGUGGGGCA-GCa -3'
miRNA:   3'- -GAGG----------UCgGGGUACGACACUCUGUaCG- -5'
29136 5' -55.1 NC_006146.1 + 110297 0.66 0.923918
Target:  5'- uCUCCgcAGCCCCAgcagGCaaacacgGAGGcCAUGCu -3'
miRNA:   3'- -GAGG--UCGGGGUa---CGaca----CUCU-GUACG- -5'
29136 5' -55.1 NC_006146.1 + 113693 0.66 0.923918
Target:  5'- -cCCGGCCUCcgGCccgGGGACGgcgGCg -3'
miRNA:   3'- gaGGUCGGGGuaCGacaCUCUGUa--CG- -5'
29136 5' -55.1 NC_006146.1 + 116686 0.68 0.857193
Target:  5'- gCUCCcGCCCCAUcCUGUacgaugcgGAGACcggGCa -3'
miRNA:   3'- -GAGGuCGGGGUAcGACA--------CUCUGua-CG- -5'
29136 5' -55.1 NC_006146.1 + 117095 0.69 0.82445
Target:  5'- uUCCAGCCCCccGCUaUG-GACGccGCg -3'
miRNA:   3'- gAGGUCGGGGuaCGAcACuCUGUa-CG- -5'
29136 5' -55.1 NC_006146.1 + 118653 0.66 0.93442
Target:  5'- uCUCCGGCCgucuCCAUGagcaaUGgugGGGACGgaaaUGCg -3'
miRNA:   3'- -GAGGUCGG----GGUACg----ACa--CUCUGU----ACG- -5'
29136 5' -55.1 NC_006146.1 + 128458 0.7 0.741252
Target:  5'- -cCCGGCCgCCAUGCUG-GcGGCGcGCa -3'
miRNA:   3'- gaGGUCGG-GGUACGACaCuCUGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.