miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 136708 0.68 0.794271
Target:  5'- cGCGagGUCCcugccuggcccAGGGUcCGGCugGGGGCGCa -3'
miRNA:   3'- cCGCagCAGG-----------UCUCA-GUCG--CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 136623 0.8 0.223099
Target:  5'- aGCGUCGUCCAGAcGcUCGG-GGGGUGCa -3'
miRNA:   3'- cCGCAGCAGGUCU-C-AGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 133059 0.67 0.828196
Target:  5'- uGGCGUC-UCCAGGGUgguuccgggUGGgGGGGUGg -3'
miRNA:   3'- -CCGCAGcAGGUCUCA---------GUCgCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 130958 0.72 0.543426
Target:  5'- cGUGUCa-UCAGGGUCAG-GAGGCGCc -3'
miRNA:   3'- cCGCAGcaGGUCUCAGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 125818 0.68 0.765524
Target:  5'- uGGCGUCGUCCucAGAcucgcaguccgaccgGUCAucaagcccaaggcccGCGAGGCc- -3'
miRNA:   3'- -CCGCAGCAGG--UCU---------------CAGU---------------CGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 125099 0.74 0.467456
Target:  5'- uGGUGUCG-CCGGGGUCGGCGGuaaacguGGC-Ca -3'
miRNA:   3'- -CCGCAGCaGGUCUCAGUCGCU-------CCGcG- -5'
29138 3' -57.8 NC_006146.1 + 124132 0.66 0.880874
Target:  5'- cGGCcagccaucCGcCCGGGGUCGG-GAGGCGa -3'
miRNA:   3'- -CCGca------GCaGGUCUCAGUCgCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 118419 0.66 0.887608
Target:  5'- cGGcCGUCGUCCAGucccuGGCcGAGGUccuGCa -3'
miRNA:   3'- -CC-GCAGCAGGUCucag-UCG-CUCCG---CG- -5'
29138 3' -57.8 NC_006146.1 + 116806 0.67 0.844182
Target:  5'- gGGCGUgguggagggCGUCCAGGacGUguGCcGGGaCGCg -3'
miRNA:   3'- -CCGCA---------GCAGGUCU--CAguCGcUCC-GCG- -5'
29138 3' -57.8 NC_006146.1 + 113504 0.67 0.819948
Target:  5'- uGCGUCGgCCGGgcacGGUC-GCGGGGCcaGCc -3'
miRNA:   3'- cCGCAGCaGGUC----UCAGuCGCUCCG--CG- -5'
29138 3' -57.8 NC_006146.1 + 112564 0.67 0.823267
Target:  5'- cGGgGUCGUgaggaugcagcuggCCAGGGUggaguucuccacccCGGCGAaGCGCa -3'
miRNA:   3'- -CCgCAGCA--------------GGUCUCA--------------GUCGCUcCGCG- -5'
29138 3' -57.8 NC_006146.1 + 108149 0.66 0.880874
Target:  5'- gGGUGaCGUUCAuguGGGUCcGCGGGGCu- -3'
miRNA:   3'- -CCGCaGCAGGU---CUCAGuCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 105661 0.71 0.592306
Target:  5'- cGGCGUCGUUCAcGGGa-AGCGAGGUc- -3'
miRNA:   3'- -CCGCAGCAGGU-CUCagUCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 100011 0.69 0.710701
Target:  5'- aGCGggcaCGUCgGGAGgCGGCGGGGUccGCg -3'
miRNA:   3'- cCGCa---GCAGgUCUCaGUCGCUCCG--CG- -5'
29138 3' -57.8 NC_006146.1 + 99868 0.66 0.887608
Target:  5'- cGGCGUacggauguagaCGUCCAGcugaucCGGCGccucugccccccGGGCGCa -3'
miRNA:   3'- -CCGCA-----------GCAGGUCuca---GUCGC------------UCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 99199 0.69 0.729927
Target:  5'- uGGCGUCcgccUCCAGGGaggccgCGGCcucGGCGCg -3'
miRNA:   3'- -CCGCAGc---AGGUCUCa-----GUCGcu-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 94901 0.69 0.720349
Target:  5'- aGGCGUCuGUCUGG-GUgGGCGAGcccaCGCa -3'
miRNA:   3'- -CCGCAG-CAGGUCuCAgUCGCUCc---GCG- -5'
29138 3' -57.8 NC_006146.1 + 91892 0.66 0.866787
Target:  5'- uGCGg-GUCgGGAGUUGGCacuaguGGGCGCa -3'
miRNA:   3'- cCGCagCAGgUCUCAGUCGc-----UCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 89857 0.69 0.758148
Target:  5'- uGGCG-CGUCCucGAuugccUCAGUGGGGgGCg -3'
miRNA:   3'- -CCGCaGCAGGu-CUc----AGUCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 88525 0.67 0.827379
Target:  5'- uGCGgcuGUCCAGAGUgcCAGCGguguguuAGGgGCu -3'
miRNA:   3'- cCGCag-CAGGUCUCA--GUCGC-------UCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.