miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 170466 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 170105 0.69 0.729927
Target:  5'- cGGCGcCG-CagggGGGGcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGCaGg---UCUCaGUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 169985 0.71 0.592306
Target:  5'- cGGCGcgCGcCCGGGGUCccgGGgGGcGGCGCg -3'
miRNA:   3'- -CCGCa-GCaGGUCUCAG---UCgCU-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 169535 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 169173 0.68 0.802978
Target:  5'- cGGCGcC-UgCAGGGggggcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGcAgGUCUCa----GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 169053 0.71 0.592306
Target:  5'- cGGCGcgCGcCCGGGGUCccgGGgGGcGGCGCg -3'
miRNA:   3'- -CCGCa-GCaGGUCUCAG---UCgCU-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 168603 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 168241 0.68 0.802978
Target:  5'- cGGCGcC-UgCAGGGggggcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGcAgGUCUCa----GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 168121 0.71 0.592306
Target:  5'- cGGCGcgCGcCCGGGGUCccgGGgGGcGGCGCg -3'
miRNA:   3'- -CCGCa-GCaGGUCUCAG---UCgCU-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 167670 0.66 0.894129
Target:  5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3'
miRNA:   3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 167309 0.68 0.802978
Target:  5'- cGGCGcC-UgCAGGGggggcCGGCGGGGCGUc -3'
miRNA:   3'- -CCGCaGcAgGUCUCa----GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 167189 0.71 0.592306
Target:  5'- cGGCGcgCGcCCGGGGUCccgGGgGGcGGCGCg -3'
miRNA:   3'- -CCGCa-GCaGGUCUCAG---UCgCU-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 166870 0.66 0.887608
Target:  5'- aGGaCGUCuUCCGGAuUCacgAGCGGGGCa- -3'
miRNA:   3'- -CC-GCAGcAGGUCUcAG---UCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 166524 0.69 0.729927
Target:  5'- uGGCGUCGgCCuggGGAGcCcGCGGGGcCGUg -3'
miRNA:   3'- -CCGCAGCaGG---UCUCaGuCGCUCC-GCG- -5'
29138 3' -57.8 NC_006146.1 + 162952 0.72 0.582451
Target:  5'- gGGaCGUUGgcaUCGGAGUUGGCG-GGCGCc -3'
miRNA:   3'- -CC-GCAGCa--GGUCUCAGUCGCuCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 158894 0.67 0.808987
Target:  5'- cGGUcUCGggcaCCGGAGUCAGCGAgcucuucugccccuGGCa- -3'
miRNA:   3'- -CCGcAGCa---GGUCUCAGUCGCU--------------CCGcg -5'
29138 3' -57.8 NC_006146.1 + 157114 1.14 0.001144
Target:  5'- cGGCGUCGUCCAGAGUCAGCGAGGCGCa -3'
miRNA:   3'- -CCGCAGCAGGUCUCAGUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 155553 0.78 0.281529
Target:  5'- gGGCGUUGgagCCGGGcUCGcGCGGGGCGCc -3'
miRNA:   3'- -CCGCAGCa--GGUCUcAGU-CGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 149834 0.72 0.543426
Target:  5'- uGGUGUgGgcggCCAGGGccUCGGCGAaGCGCa -3'
miRNA:   3'- -CCGCAgCa---GGUCUC--AGUCGCUcCGCG- -5'
29138 3' -57.8 NC_006146.1 + 146618 0.66 0.887608
Target:  5'- aGCGUCcagcccccggCCAGGGUCA-CGAGGCc- -3'
miRNA:   3'- cCGCAGca--------GGUCUCAGUcGCUCCGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.