miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 4662 0.69 0.748835
Target:  5'- -cCGcCGUCCugggccGGGUgGGCGAGGCGg -3'
miRNA:   3'- ccGCaGCAGGu-----CUCAgUCGCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 15554 0.69 0.718425
Target:  5'- aGGCGggccuUCGUCUcgggucccugggaGGAcaggcgcGUCGGCGAgGGCGCg -3'
miRNA:   3'- -CCGC-----AGCAGG-------------UCU-------CAGUCGCU-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 24030 0.69 0.710701
Target:  5'- aGGCGUCGUCCcccu--GGCGGGGUGa -3'
miRNA:   3'- -CCGCAGCAGGucucagUCGCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 32793 0.8 0.223099
Target:  5'- aGCGUCGUCCAGAcGcUCGG-GGGGUGCa -3'
miRNA:   3'- cCGCAGCAGGUCU-C-AGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 32878 0.68 0.802978
Target:  5'- cGCGagGUCCcugccuggcaccAGGGUcCGGCugGGGGCGCa -3'
miRNA:   3'- cCGCagCAGG------------UCUCA-GUCG--CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 33785 0.73 0.505296
Target:  5'- gGGCGUgGUCCGauGGGUCcGCGGguuuGGUGCa -3'
miRNA:   3'- -CCGCAgCAGGU--CUCAGuCGCU----CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 33971 0.67 0.828196
Target:  5'- gGGCGUgGUCCGcuGGGUCcGCuGGuccGGUGCa -3'
miRNA:   3'- -CCGCAgCAGGU--CUCAGuCG-CU---CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 37877 0.68 0.785427
Target:  5'- cGGCGagcaGU--AGAGaCGGCGAGGUGCg -3'
miRNA:   3'- -CCGCag--CAggUCUCaGUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 41066 0.66 0.863873
Target:  5'- gGGCcUCGggguggagggaggCCAGGGaCAGCGAGGgGa -3'
miRNA:   3'- -CCGcAGCa------------GGUCUCaGUCGCUCCgCg -5'
29138 3' -57.8 NC_006146.1 + 42371 0.79 0.245132
Target:  5'- cGCGcCG-CCAGGGUgGGCGAGGgGCg -3'
miRNA:   3'- cCGCaGCaGGUCUCAgUCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 43330 0.73 0.524228
Target:  5'- cGGCcUCGgccgcCCAGGGcCAGC-AGGCGCa -3'
miRNA:   3'- -CCGcAGCa----GGUCUCaGUCGcUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 43571 0.66 0.859443
Target:  5'- cGGCGUacugagCGUucCCGGGG--AGCGGGGCGg -3'
miRNA:   3'- -CCGCA------GCA--GGUCUCagUCGCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 43605 0.68 0.788981
Target:  5'- aGGCcggGUCGggUCGGGGgaagagggagugggCGGCGGGGCGUg -3'
miRNA:   3'- -CCG---CAGCa-GGUCUCa-------------GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 43925 0.72 0.582451
Target:  5'- cGCGUCGcCCGGcAGUCGGgCGGGGUc- -3'
miRNA:   3'- cCGCAGCaGGUC-UCAGUC-GCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 44777 0.75 0.382691
Target:  5'- gGGUGcCGUgCCGGGcUCAGgGGGGCGCa -3'
miRNA:   3'- -CCGCaGCA-GGUCUcAGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 46038 0.66 0.859443
Target:  5'- aGGCGaCGgggcccUCCAGGGgacgCAGCGAG-UGCc -3'
miRNA:   3'- -CCGCaGC------AGGUCUCa---GUCGCUCcGCG- -5'
29138 3' -57.8 NC_006146.1 + 47055 0.73 0.505296
Target:  5'- gGGCcgGUCG-CCGGuGUCGGUGAgggGGCGCc -3'
miRNA:   3'- -CCG--CAGCaGGUCuCAGUCGCU---CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 48228 0.67 0.81154
Target:  5'- uGGCG-CG-CCuGGGUgAGCGccGCGCg -3'
miRNA:   3'- -CCGCaGCaGGuCUCAgUCGCucCGCG- -5'
29138 3' -57.8 NC_006146.1 + 48820 0.66 0.859443
Target:  5'- gGGCGgUGUCCAGAaaggccuUCAGCugcuccucgGAGGCGg -3'
miRNA:   3'- -CCGCaGCAGGUCUc------AGUCG---------CUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 49488 0.75 0.415712
Target:  5'- cGGUGUCGgCCAGGGgCGGCGuGGCa- -3'
miRNA:   3'- -CCGCAGCaGGUCUCaGUCGCuCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.