miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 157114 1.14 0.001144
Target:  5'- cGGCGUCGUCCAGAGUCAGCGAGGCGCa -3'
miRNA:   3'- -CCGCAGCAGGUCUCAGUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 136623 0.8 0.223099
Target:  5'- aGCGUCGUCCAGAcGcUCGG-GGGGUGCa -3'
miRNA:   3'- cCGCAGCAGGUCU-C-AGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 32793 0.8 0.223099
Target:  5'- aGCGUCGUCCAGAcGcUCGG-GGGGUGCa -3'
miRNA:   3'- cCGCAGCAGGUCU-C-AGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 42371 0.79 0.245132
Target:  5'- cGCGcCG-CCAGGGUgGGCGAGGgGCg -3'
miRNA:   3'- cCGCaGCaGGUCUCAgUCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 155553 0.78 0.281529
Target:  5'- gGGCGUUGgagCCGGGcUCGcGCGGGGCGCc -3'
miRNA:   3'- -CCGCAGCa--GGUCUcAGU-CGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 55764 0.76 0.366848
Target:  5'- cGGCGgCGggCCAGGGgCAGCGAGGC-Ca -3'
miRNA:   3'- -CCGCaGCa-GGUCUCaGUCGCUCCGcG- -5'
29138 3' -57.8 NC_006146.1 + 44777 0.75 0.382691
Target:  5'- gGGUGcCGUgCCGGGcUCAGgGGGGCGCa -3'
miRNA:   3'- -CCGCaGCA-GGUCUcAGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 49488 0.75 0.415712
Target:  5'- cGGUGUCGgCCAGGGgCGGCGuGGCa- -3'
miRNA:   3'- -CCGCAGCaGGUCUCaGUCGCuCCGcg -5'
29138 3' -57.8 NC_006146.1 + 125099 0.74 0.467456
Target:  5'- uGGUGUCG-CCGGGGUCGGCGGuaaacguGGC-Ca -3'
miRNA:   3'- -CCGCAGCaGGUCUCAGUCGCU-------CCGcG- -5'
29138 3' -57.8 NC_006146.1 + 33785 0.73 0.505296
Target:  5'- gGGCGUgGUCCGauGGGUCcGCGGguuuGGUGCa -3'
miRNA:   3'- -CCGCAgCAGGU--CUCAGuCGCU----CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 47055 0.73 0.505296
Target:  5'- gGGCcgGUCG-CCGGuGUCGGUGAgggGGCGCc -3'
miRNA:   3'- -CCG--CAGCaGGUCuCAGUCGCU---CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 43330 0.73 0.524228
Target:  5'- cGGCcUCGgccgcCCAGGGcCAGC-AGGCGCa -3'
miRNA:   3'- -CCGcAGCa----GGUCUCaGUCGcUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 50161 0.73 0.524228
Target:  5'- -uCGUCGUCCAGGacCAGgGGGGCGUu -3'
miRNA:   3'- ccGCAGCAGGUCUcaGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 149834 0.72 0.543426
Target:  5'- uGGUGUgGgcggCCAGGGccUCGGCGAaGCGCa -3'
miRNA:   3'- -CCGCAgCa---GGUCUC--AGUCGCUcCGCG- -5'
29138 3' -57.8 NC_006146.1 + 130958 0.72 0.543426
Target:  5'- cGUGUCa-UCAGGGUCAG-GAGGCGCc -3'
miRNA:   3'- cCGCAGcaGGUCUCAGUCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 162952 0.72 0.582451
Target:  5'- gGGaCGUUGgcaUCGGAGUUGGCG-GGCGCc -3'
miRNA:   3'- -CC-GCAGCa--GGUCUCAGUCGCuCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 43925 0.72 0.582451
Target:  5'- cGCGUCGcCCGGcAGUCGGgCGGGGUc- -3'
miRNA:   3'- cCGCAGCaGGUC-UCAGUC-GCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 105661 0.71 0.592306
Target:  5'- cGGCGUCGUUCAcGGGa-AGCGAGGUc- -3'
miRNA:   3'- -CCGCAGCAGGU-CUCagUCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 168121 0.71 0.592306
Target:  5'- cGGCGcgCGcCCGGGGUCccgGGgGGcGGCGCg -3'
miRNA:   3'- -CCGCa-GCaGGUCUCAG---UCgCU-CCGCG- -5'
29138 3' -57.8 NC_006146.1 + 167189 0.71 0.592306
Target:  5'- cGGCGcgCGcCCGGGGUCccgGGgGGcGGCGCg -3'
miRNA:   3'- -CCGCa-GCaGGUCUCAG---UCgCU-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.