Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29138 | 3' | -57.8 | NC_006146.1 | + | 91892 | 0.66 | 0.866787 |
Target: 5'- uGCGg-GUCgGGAGUUGGCacuaguGGGCGCa -3' miRNA: 3'- cCGCagCAGgUCUCAGUCGc-----UCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 41066 | 0.66 | 0.863873 |
Target: 5'- gGGCcUCGggguggagggaggCCAGGGaCAGCGAGGgGa -3' miRNA: 3'- -CCGcAGCa------------GGUCUCaGUCGCUCCgCg -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 43571 | 0.66 | 0.859443 |
Target: 5'- cGGCGUacugagCGUucCCGGGG--AGCGGGGCGg -3' miRNA: 3'- -CCGCA------GCA--GGUCUCagUCGCUCCGCg -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 57903 | 0.67 | 0.851906 |
Target: 5'- cGGCGccUUGUCCAGGacaugCAGa-GGGCGCu -3' miRNA: 3'- -CCGC--AGCAGGUCUca---GUCgcUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 32878 | 0.68 | 0.802978 |
Target: 5'- cGCGagGUCCcugccuggcaccAGGGUcCGGCugGGGGCGCa -3' miRNA: 3'- cCGCagCAGG------------UCUCA-GUCG--CUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 50011 | 0.67 | 0.81154 |
Target: 5'- aGGCGaucCGguugaugcagCCGGGGUCgaggcgcaggAGgGAGGCGCa -3' miRNA: 3'- -CCGCa--GCa---------GGUCUCAG----------UCgCUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 113504 | 0.67 | 0.819948 |
Target: 5'- uGCGUCGgCCGGgcacGGUC-GCGGGGCcaGCc -3' miRNA: 3'- cCGCAGCaGGUC----UCAGuCGCUCCG--CG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 112564 | 0.67 | 0.823267 |
Target: 5'- cGGgGUCGUgaggaugcagcuggCCAGGGUggaguucuccacccCGGCGAaGCGCa -3' miRNA: 3'- -CCgCAGCA--------------GGUCUCA--------------GUCGCUcCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 83687 | 0.67 | 0.844182 |
Target: 5'- uGGCGUCuUCCAGcAGUCuGUGcuGCuGCa -3' miRNA: 3'- -CCGCAGcAGGUC-UCAGuCGCucCG-CG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 116806 | 0.67 | 0.844182 |
Target: 5'- gGGCGUgguggagggCGUCCAGGacGUguGCcGGGaCGCg -3' miRNA: 3'- -CCGCA---------GCAGGUCU--CAguCGcUCC-GCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 130958 | 0.72 | 0.543426 |
Target: 5'- cGUGUCa-UCAGGGUCAG-GAGGCGCc -3' miRNA: 3'- cCGCAGcaGGUCUCAGUCgCUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 43330 | 0.73 | 0.524228 |
Target: 5'- cGGCcUCGgccgcCCAGGGcCAGC-AGGCGCa -3' miRNA: 3'- -CCGcAGCa----GGUCUCaGUCGcUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 50161 | 0.73 | 0.524228 |
Target: 5'- -uCGUCGUCCAGGacCAGgGGGGCGUu -3' miRNA: 3'- ccGCAGCAGGUCUcaGUCgCUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 33785 | 0.73 | 0.505296 |
Target: 5'- gGGCGUgGUCCGauGGGUCcGCGGguuuGGUGCa -3' miRNA: 3'- -CCGCAgCAGGU--CUCAGuCGCU----CCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 47055 | 0.73 | 0.505296 |
Target: 5'- gGGCcgGUCG-CCGGuGUCGGUGAgggGGCGCc -3' miRNA: 3'- -CCG--CAGCaGGUCuCAGUCGCU---CCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 125099 | 0.74 | 0.467456 |
Target: 5'- uGGUGUCG-CCGGGGUCGGCGGuaaacguGGC-Ca -3' miRNA: 3'- -CCGCAGCaGGUCUCAGUCGCU-------CCGcG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 49488 | 0.75 | 0.415712 |
Target: 5'- cGGUGUCGgCCAGGGgCGGCGuGGCa- -3' miRNA: 3'- -CCGCAGCaGGUCUCaGUCGCuCCGcg -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 55764 | 0.76 | 0.366848 |
Target: 5'- cGGCGgCGggCCAGGGgCAGCGAGGC-Ca -3' miRNA: 3'- -CCGCaGCa-GGUCUCaGUCGCUCCGcG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 155553 | 0.78 | 0.281529 |
Target: 5'- gGGCGUUGgagCCGGGcUCGcGCGGGGCGCc -3' miRNA: 3'- -CCGCAGCa--GGUCUcAGU-CGCUCCGCG- -5' |
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29138 | 3' | -57.8 | NC_006146.1 | + | 170466 | 0.66 | 0.894129 |
Target: 5'- gGGCGU-GUCCcgcgacccgAGGGgcgAGCGGGGgGCu -3' miRNA: 3'- -CCGCAgCAGG---------UCUCag-UCGCUCCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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