miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29138 3' -57.8 NC_006146.1 + 166524 0.69 0.729927
Target:  5'- uGGCGUCGgCCuggGGAGcCcGCGGGGcCGUg -3'
miRNA:   3'- -CCGCAGCaGG---UCUCaGuCGCUCC-GCG- -5'
29138 3' -57.8 NC_006146.1 + 50011 0.67 0.81154
Target:  5'- aGGCGaucCGguugaugcagCCGGGGUCgaggcgcaggAGgGAGGCGCa -3'
miRNA:   3'- -CCGCa--GCa---------GGUCUCAG----------UCgCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 32878 0.68 0.802978
Target:  5'- cGCGagGUCCcugccuggcaccAGGGUcCGGCugGGGGCGCa -3'
miRNA:   3'- cCGCagCAGG------------UCUCA-GUCG--CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 61316 0.68 0.802978
Target:  5'- cGGCGUCcugCCcGGGUggccuagcCGGCGAGGCa- -3'
miRNA:   3'- -CCGCAGca-GGuCUCA--------GUCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 136708 0.68 0.794271
Target:  5'- cGCGagGUCCcugccuggcccAGGGUcCGGCugGGGGCGCa -3'
miRNA:   3'- cCGCagCAGG-----------UCUCA-GUCG--CUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 43605 0.68 0.788981
Target:  5'- aGGCcggGUCGggUCGGGGgaagagggagugggCGGCGGGGCGUg -3'
miRNA:   3'- -CCG---CAGCa-GGUCUCa-------------GUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 37877 0.68 0.785427
Target:  5'- cGGCGagcaGU--AGAGaCGGCGAGGUGCg -3'
miRNA:   3'- -CCGCag--CAggUCUCaGUCGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 50725 0.68 0.776453
Target:  5'- cGGCGUUGagCGGGGgCGaCGGGGCGUc -3'
miRNA:   3'- -CCGCAGCagGUCUCaGUcGCUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 89857 0.69 0.758148
Target:  5'- uGGCG-CGUCCucGAuugccUCAGUGGGGgGCg -3'
miRNA:   3'- -CCGCaGCAGGu-CUc----AGUCGCUCCgCG- -5'
29138 3' -57.8 NC_006146.1 + 113504 0.67 0.819948
Target:  5'- uGCGUCGgCCGGgcacGGUC-GCGGGGCcaGCc -3'
miRNA:   3'- cCGCAGCaGGUC----UCAGuCGCUCCG--CG- -5'
29138 3' -57.8 NC_006146.1 + 112564 0.67 0.823267
Target:  5'- cGGgGUCGUgaggaugcagcuggCCAGGGUggaguucuccacccCGGCGAaGCGCa -3'
miRNA:   3'- -CCgCAGCA--------------GGUCUCA--------------GUCGCUcCGCG- -5'
29138 3' -57.8 NC_006146.1 + 83687 0.67 0.844182
Target:  5'- uGGCGUCuUCCAGcAGUCuGUGcuGCuGCa -3'
miRNA:   3'- -CCGCAGcAGGUC-UCAGuCGCucCG-CG- -5'
29138 3' -57.8 NC_006146.1 + 166870 0.66 0.887608
Target:  5'- aGGaCGUCuUCCGGAuUCacgAGCGGGGCa- -3'
miRNA:   3'- -CC-GCAGcAGGUCUcAG---UCGCUCCGcg -5'
29138 3' -57.8 NC_006146.1 + 118419 0.66 0.887608
Target:  5'- cGGcCGUCGUCCAGucccuGGCcGAGGUccuGCa -3'
miRNA:   3'- -CC-GCAGCAGGUCucag-UCG-CUCCG---CG- -5'
29138 3' -57.8 NC_006146.1 + 124132 0.66 0.880874
Target:  5'- cGGCcagccaucCGcCCGGGGUCGG-GAGGCGa -3'
miRNA:   3'- -CCGca------GCaGGUCUCAGUCgCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 91892 0.66 0.866787
Target:  5'- uGCGg-GUCgGGAGUUGGCacuaguGGGCGCa -3'
miRNA:   3'- cCGCagCAGgUCUCAGUCGc-----UCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 41066 0.66 0.863873
Target:  5'- gGGCcUCGggguggagggaggCCAGGGaCAGCGAGGgGa -3'
miRNA:   3'- -CCGcAGCa------------GGUCUCaGUCGCUCCgCg -5'
29138 3' -57.8 NC_006146.1 + 43571 0.66 0.859443
Target:  5'- cGGCGUacugagCGUucCCGGGG--AGCGGGGCGg -3'
miRNA:   3'- -CCGCA------GCA--GGUCUCagUCGCUCCGCg -5'
29138 3' -57.8 NC_006146.1 + 57903 0.67 0.851906
Target:  5'- cGGCGccUUGUCCAGGacaugCAGa-GGGCGCu -3'
miRNA:   3'- -CCGC--AGCAGGUCUca---GUCgcUCCGCG- -5'
29138 3' -57.8 NC_006146.1 + 116806 0.67 0.844182
Target:  5'- gGGCGUgguggagggCGUCCAGGacGUguGCcGGGaCGCg -3'
miRNA:   3'- -CCGCA---------GCAGGUCU--CAguCGcUCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.