miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 3' -51.5 NC_006146.1 + 108579 0.66 0.994363
Target:  5'- uGGCgGCgGCGUCUcUGGCcucgcuggGCUCUCc -3'
miRNA:   3'- -CCG-UGgUGCAGAuACUGcaa-----CGAGAG- -5'
29140 3' -51.5 NC_006146.1 + 74330 0.66 0.994363
Target:  5'- -cCACCACGUCaGUGACcccacugaugGUcuUGUUCUCc -3'
miRNA:   3'- ccGUGGUGCAGaUACUG----------CA--ACGAGAG- -5'
29140 3' -51.5 NC_006146.1 + 144838 0.66 0.993574
Target:  5'- cGGC-CCACGUUgc-GGCGggccaauugcagcgGCUCUCc -3'
miRNA:   3'- -CCGuGGUGCAGauaCUGCaa------------CGAGAG- -5'
29140 3' -51.5 NC_006146.1 + 123791 0.66 0.991387
Target:  5'- uGGCugC-CGUCaugGUGACG--GCUCUg -3'
miRNA:   3'- -CCGugGuGCAGa--UACUGCaaCGAGAg -5'
29140 3' -51.5 NC_006146.1 + 50090 0.66 0.990158
Target:  5'- cGGCACCugGaUCU--GACuccgGUUGCggagCUCg -3'
miRNA:   3'- -CCGUGGugC-AGAuaCUG----CAACGa---GAG- -5'
29140 3' -51.5 NC_006146.1 + 140632 0.66 0.989357
Target:  5'- gGGgACCACGgcgcuccuuggugcCUGUGGUGaUGCUCUCu -3'
miRNA:   3'- -CCgUGGUGCa-------------GAUACUGCaACGAGAG- -5'
29140 3' -51.5 NC_006146.1 + 120189 0.67 0.979671
Target:  5'- gGGC-CCuCGUCUAUGACccgGC-CUCu -3'
miRNA:   3'- -CCGuGGuGCAGAUACUGcaaCGaGAG- -5'
29140 3' -51.5 NC_006146.1 + 165917 0.68 0.977322
Target:  5'- aGGCACCccGCGUUaGUGAaggccgccaGgagGCUCUCg -3'
miRNA:   3'- -CCGUGG--UGCAGaUACUg--------Caa-CGAGAG- -5'
29140 3' -51.5 NC_006146.1 + 101860 0.68 0.977322
Target:  5'- cGCACCACGg--GUGGCGggGCg--- -3'
miRNA:   3'- cCGUGGUGCagaUACUGCaaCGagag -5'
29140 3' -51.5 NC_006146.1 + 107047 0.68 0.969085
Target:  5'- uGGCACCACGU--GUGGCGagugGCUa-- -3'
miRNA:   3'- -CCGUGGUGCAgaUACUGCaa--CGAgag -5'
29140 3' -51.5 NC_006146.1 + 65060 0.68 0.965917
Target:  5'- cGGCACUGCGUCUAcucGGCGgcGCg--- -3'
miRNA:   3'- -CCGUGGUGCAGAUa--CUGCaaCGagag -5'
29140 3' -51.5 NC_006146.1 + 90046 0.7 0.932181
Target:  5'- uGGCACCGCGgggugcgUUAUGcACGUgggccauggccgUGUUCUCc -3'
miRNA:   3'- -CCGUGGUGCa------GAUAC-UGCA------------ACGAGAG- -5'
29140 3' -51.5 NC_006146.1 + 87411 0.74 0.752989
Target:  5'- aGGCACCACGcuUCUGUGaAUGUgGUUCUg -3'
miRNA:   3'- -CCGUGGUGC--AGAUAC-UGCAaCGAGAg -5'
29140 3' -51.5 NC_006146.1 + 157750 1.12 0.005738
Target:  5'- cGGCACCACGUCUAUGACGUUGCUCUCc -3'
miRNA:   3'- -CCGUGGUGCAGAUACUGCAACGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.