miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 162398 0.66 0.832171
Target:  5'- cCCGGGA-CCCCgGUgggCCAgGAugGuGGGg -3'
miRNA:   3'- -GGCCCUcGGGGgCA---GGUgUUugU-CCC- -5'
29140 5' -58.9 NC_006146.1 + 155572 0.66 0.832171
Target:  5'- gCGcGGGGCgCCCG-CCAgGGGCAcaccGGGg -3'
miRNA:   3'- gGC-CCUCGgGGGCaGGUgUUUGU----CCC- -5'
29140 5' -58.9 NC_006146.1 + 131049 0.66 0.832171
Target:  5'- cCCGGGcacacAGCCCCCGccggcCCACuguGCGGc- -3'
miRNA:   3'- -GGCCC-----UCGGGGGCa----GGUGuu-UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 169070 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 167206 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 168138 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 170002 0.67 0.827359
Target:  5'- cCCGGGGGgcggcgcgcggccuuCCCCCGUCUGCucccGCGGc- -3'
miRNA:   3'- -GGCCCUC---------------GGGGGCAGGUGuu--UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 132441 0.67 0.824118
Target:  5'- cCCGGauGGCaCCCGUcaccCCGgAGGCAGGGg -3'
miRNA:   3'- -GGCCc-UCGgGGGCA----GGUgUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 57826 0.67 0.824118
Target:  5'- gCCGGGuGCUCCaaccUCCaggcagagACAAACAGGa -3'
miRNA:   3'- -GGCCCuCGGGGgc--AGG--------UGUUUGUCCc -5'
29140 5' -58.9 NC_006146.1 + 112658 0.67 0.824118
Target:  5'- aCCGGGccccuuuuauAGCCCuuGUCCACGccCccGGu -3'
miRNA:   3'- -GGCCC----------UCGGGggCAGGUGUuuGucCC- -5'
29140 5' -58.9 NC_006146.1 + 56205 0.67 0.824118
Target:  5'- cCCGGGucucgcggacgAGCCgcgagCCGUCCAgCGGguccGCGGGGg -3'
miRNA:   3'- -GGCCC-----------UCGGg----GGCAGGU-GUU----UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 170681 0.67 0.824118
Target:  5'- gCCaGGGGCgCCCCGgggaCCGuc-GCGGGGg -3'
miRNA:   3'- -GGcCCUCG-GGGGCa---GGUguuUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 22251 0.67 0.82167
Target:  5'- -aGGGcaaaugaagacaauGGUCUggaaGUCCACAGACAGGGa -3'
miRNA:   3'- ggCCC--------------UCGGGgg--CAGGUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 79649 0.67 0.820851
Target:  5'- gCCGGcGAGCCCCCcauggggacgaCAC-AGCGGGa -3'
miRNA:   3'- -GGCC-CUCGGGGGcag--------GUGuUUGUCCc -5'
29140 5' -58.9 NC_006146.1 + 14662 0.67 0.815904
Target:  5'- aCCac-GGCaCCCCGUCCACGGcCgAGGGg -3'
miRNA:   3'- -GGcccUCG-GGGGCAGGUGUUuG-UCCC- -5'
29140 5' -58.9 NC_006146.1 + 9479 0.67 0.815904
Target:  5'- cCCGcGGGGCCacaCCCG-CCugGcACAGGc -3'
miRNA:   3'- -GGC-CCUCGG---GGGCaGGugUuUGUCCc -5'
29140 5' -58.9 NC_006146.1 + 46090 0.67 0.815904
Target:  5'- cUCGGGGGCgaagcaCCGUCgCGCGAGCAGc- -3'
miRNA:   3'- -GGCCCUCGgg----GGCAG-GUGUUUGUCcc -5'
29140 5' -58.9 NC_006146.1 + 110127 0.67 0.815904
Target:  5'- gCCGGGcauuaAGCCCCgca-CGCGcAGCAGGGc -3'
miRNA:   3'- -GGCCC-----UCGGGGgcagGUGU-UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 128524 0.67 0.815904
Target:  5'- cCUGGGGcGCCCCuCGcCCACccuGGCGgcgcGGGa -3'
miRNA:   3'- -GGCCCU-CGGGG-GCaGGUGu--UUGU----CCC- -5'
29140 5' -58.9 NC_006146.1 + 25587 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.