miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 22618 0.66 0.855309
Target:  5'- gCuGGAGCUCCUGUUCugGGuGCuGGGg -3'
miRNA:   3'- gGcCCUCGGGGGCAGGugUU-UGuCCC- -5'
29140 5' -58.9 NC_006146.1 + 55584 0.66 0.855309
Target:  5'- uCCGGGGuGCCguagguCUgGUCCcaGAGCAGGGc -3'
miRNA:   3'- -GGCCCU-CGG------GGgCAGGugUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 34092 0.66 0.850809
Target:  5'- cCCGGGgggcagccgcgacccAGCgcgCCCCGUUCACG---GGGGa -3'
miRNA:   3'- -GGCCC---------------UCG---GGGGCAGGUGUuugUCCC- -5'
29140 5' -58.9 NC_006146.1 + 137995 0.66 0.847773
Target:  5'- gCGGGGuggggggugcGCCCCCaG-CCGgacccuggugcCAGGCAGGGa -3'
miRNA:   3'- gGCCCU----------CGGGGG-CaGGU-----------GUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 161708 0.66 0.847773
Target:  5'- -gGGGAGCUCCUGggagaaggCUugGGGguGGGu -3'
miRNA:   3'- ggCCCUCGGGGGCa-------GGugUUUguCCC- -5'
29140 5' -58.9 NC_006146.1 + 24023 0.66 0.847773
Target:  5'- aCCGGcGAGgCgUCGUCCcccuGGCGGGGu -3'
miRNA:   3'- -GGCC-CUCgGgGGCAGGugu-UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 57337 0.66 0.847773
Target:  5'- uCUGGGGGCggggCCCCGggUguCGGugAGGGa -3'
miRNA:   3'- -GGCCCUCG----GGGGCa-GguGUUugUCCC- -5'
29140 5' -58.9 NC_006146.1 + 56819 0.66 0.847773
Target:  5'- gCGGGgcuucuGGCCCCCGaggcggCCuCuggcGGCGGGGg -3'
miRNA:   3'- gGCCC------UCGGGGGCa-----GGuGu---UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 116110 0.66 0.847773
Target:  5'- cCCGaGGGUCCCCGUaaaACAAGuggaAGGGg -3'
miRNA:   3'- -GGCcCUCGGGGGCAgg-UGUUUg---UCCC- -5'
29140 5' -58.9 NC_006146.1 + 25941 0.66 0.847773
Target:  5'- cCCaGGAGCCCUgGUCC-CcAGCAGc- -3'
miRNA:   3'- -GGcCCUCGGGGgCAGGuGuUUGUCcc -5'
29140 5' -58.9 NC_006146.1 + 34151 0.66 0.840059
Target:  5'- uCCcGGAGCCCCgG-CgAgGGugGGGGg -3'
miRNA:   3'- -GGcCCUCGGGGgCaGgUgUUugUCCC- -5'
29140 5' -58.9 NC_006146.1 + 30226 0.66 0.840059
Target:  5'- gCCGGGcuGGCCggauacCCCGgaaauuggCCGCAAAaAGGGc -3'
miRNA:   3'- -GGCCC--UCGG------GGGCa-------GGUGUUUgUCCC- -5'
29140 5' -58.9 NC_006146.1 + 42549 0.66 0.840059
Target:  5'- -aGGGGGCCUguCCGUCCGuCGGcuucaucucCAGGGc -3'
miRNA:   3'- ggCCCUCGGG--GGCAGGU-GUUu--------GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 156546 0.66 0.840059
Target:  5'- cCCGGGA---CCCGaccCCACcAGCAGGGc -3'
miRNA:   3'- -GGCCCUcggGGGCa--GGUGuUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 71218 0.66 0.839278
Target:  5'- gCCGGGGGCUUCgaGUCCuggcugguCAAcuccuggggccugGCGGGGg -3'
miRNA:   3'- -GGCCCUCGGGGg-CAGGu-------GUU-------------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 131049 0.66 0.832171
Target:  5'- cCCGGGcacacAGCCCCCGccggcCCACuguGCGGc- -3'
miRNA:   3'- -GGCCC-----UCGGGGGCa----GGUGuu-UGUCcc -5'
29140 5' -58.9 NC_006146.1 + 78812 0.66 0.832171
Target:  5'- cCUGGGAgGCCCaCgCGUCCagGCAGccgugucCGGGGg -3'
miRNA:   3'- -GGCCCU-CGGG-G-GCAGG--UGUUu------GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 36218 0.66 0.832171
Target:  5'- cCCGGGAGCgCaagCCGgCCGgGgaggaGGCAGGGc -3'
miRNA:   3'- -GGCCCUCG-Gg--GGCaGGUgU-----UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 208 0.66 0.832171
Target:  5'- gCCGGu-GCCCCCG-CgACGGucccCGGGGc -3'
miRNA:   3'- -GGCCcuCGGGGGCaGgUGUUu---GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 155572 0.66 0.832171
Target:  5'- gCGcGGGGCgCCCG-CCAgGGGCAcaccGGGg -3'
miRNA:   3'- gGC-CCUCGgGGGCaGGUgUUUGU----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.