miRNA display CGI


Results 21 - 40 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 16455 0.68 0.745327
Target:  5'- cUCGGGgcccagGGCCCCUaGUCCAgaGGACGGaGGa -3'
miRNA:   3'- -GGCCC------UCGGGGG-CAGGUg-UUUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 16891 0.68 0.754551
Target:  5'- gCGGGccGGCUCCU-UCCACGu-CAGGGa -3'
miRNA:   3'- gGCCC--UCGGGGGcAGGUGUuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 19010 0.66 0.862659
Target:  5'- gUGGGGGCCCCCucgaguuccacGUCUACGAcauCcuGGa -3'
miRNA:   3'- gGCCCUCGGGGG-----------CAGGUGUUu--GucCC- -5'
29140 5' -58.9 NC_006146.1 + 19431 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5'
29140 5' -58.9 NC_006146.1 + 19533 0.68 0.745327
Target:  5'- cUCGGGgcccagGGCCCCUaGUCCAgaGGACGGaGGa -3'
miRNA:   3'- -GGCCC------UCGGGGG-CAGGUg-UUUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 22251 0.67 0.82167
Target:  5'- -aGGGcaaaugaagacaauGGUCUggaaGUCCACAGACAGGGa -3'
miRNA:   3'- ggCCC--------------UCGGGgg--CAGGUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 22509 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5'
29140 5' -58.9 NC_006146.1 + 22611 0.68 0.745327
Target:  5'- cUCGGGgcccagGGCCCCUaGUCCAgaGGACGGaGGa -3'
miRNA:   3'- -GGCCC------UCGGGGG-CAGGUg-UUUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 22618 0.66 0.855309
Target:  5'- gCuGGAGCUCCUGUUCugGGuGCuGGGg -3'
miRNA:   3'- gGcCCUCGGGGGCAGGugUU-UGuCCC- -5'
29140 5' -58.9 NC_006146.1 + 24023 0.66 0.847773
Target:  5'- aCCGGcGAGgCgUCGUCCcccuGGCGGGGu -3'
miRNA:   3'- -GGCC-CUCgGgGGCAGGugu-UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 25587 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5'
29140 5' -58.9 NC_006146.1 + 25689 0.68 0.745327
Target:  5'- cUCGGGgcccagGGCCCCUaGUCCAgaGGACGGaGGa -3'
miRNA:   3'- -GGCCC------UCGGGGG-CAGGUg-UUUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 25941 0.66 0.847773
Target:  5'- cCCaGGAGCCCUgGUCC-CcAGCAGc- -3'
miRNA:   3'- -GGcCCUCGGGGgCAGGuGuUUGUCcc -5'
29140 5' -58.9 NC_006146.1 + 27907 0.67 0.799026
Target:  5'- aCCGGGAGCugcuCCCaCGgCCAaGGGCuAGGGc -3'
miRNA:   3'- -GGCCCUCG----GGG-GCaGGUgUUUG-UCCC- -5'
29140 5' -58.9 NC_006146.1 + 28665 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5'
29140 5' -58.9 NC_006146.1 + 28767 0.68 0.745327
Target:  5'- cUCGGGgcccagGGCCCCUaGUCCAgaGGACGGaGGa -3'
miRNA:   3'- -GGCCC------UCGGGGG-CAGGUg-UUUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 30226 0.66 0.840059
Target:  5'- gCCGGGcuGGCCggauacCCCGgaaauuggCCGCAAAaAGGGc -3'
miRNA:   3'- -GGCCC--UCGG------GGGCa-------GGUGUUUgUCCC- -5'
29140 5' -58.9 NC_006146.1 + 31767 0.75 0.353085
Target:  5'- aCGGGAGCCCCCGUUCgGCccACAGc- -3'
miRNA:   3'- gGCCCUCGGGGGCAGG-UGuuUGUCcc -5'
29140 5' -58.9 NC_006146.1 + 32938 0.74 0.399258
Target:  5'- cCCGGGAGgCCCgG-CCGCGAuccucccccgugaACGGGGc -3'
miRNA:   3'- -GGCCCUCgGGGgCaGGUGUU-------------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 33244 0.66 0.855309
Target:  5'- gCCGGcGGGUCCgCCGggCCGCugccccgcuccgGGugGGGGg -3'
miRNA:   3'- -GGCC-CUCGGG-GGCa-GGUG------------UUugUCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.