miRNA display CGI


Results 1 - 20 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 208 0.66 0.832171
Target:  5'- gCCGGu-GCCCCCG-CgACGGucccCGGGGc -3'
miRNA:   3'- -GGCCcuCGGGGGCaGgUGUUu---GUCCC- -5'
29140 5' -58.9 NC_006146.1 + 449 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 1148 0.68 0.772693
Target:  5'- cCCGcGaGGGUCCCCGggCCGCcc-CGGGGc -3'
miRNA:   3'- -GGC-C-CUCGGGGGCa-GGUGuuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 1380 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 2080 0.68 0.772693
Target:  5'- cCCGcGaGGGUCCCCGggCCGCcc-CGGGGc -3'
miRNA:   3'- -GGC-C-CUCGGGGGCa-GGUGuuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 2312 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 2627 0.69 0.678674
Target:  5'- gUCuGGAGCacggCUUCGUCCACAcGGCGGGGa -3'
miRNA:   3'- -GGcCCUCG----GGGGCAGGUGU-UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 3012 0.68 0.772693
Target:  5'- cCCGcGaGGGUCCCCGggCCGCcc-CGGGGc -3'
miRNA:   3'- -GGC-C-CUCGGGGGCa-GGUGuuuGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 3244 0.66 0.862659
Target:  5'- gCGGGAcacGCCCCCGggUCCcccgGCAcGCGccGGGc -3'
miRNA:   3'- gGCCCU---CGGGGGC--AGG----UGUuUGU--CCC- -5'
29140 5' -58.9 NC_006146.1 + 3692 0.68 0.736013
Target:  5'- -gGGGAGCaaagagcaCCUGgucagacaCACAGACAGGGu -3'
miRNA:   3'- ggCCCUCGg-------GGGCag------GUGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 3724 0.7 0.645513
Target:  5'- cCCGGGcgcgcgccGGCCuCCCGUCCcgaaggcccuggcACAGugcccacuuucuacGCGGGGg -3'
miRNA:   3'- -GGCCC--------UCGG-GGGCAGG-------------UGUU--------------UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 4288 0.67 0.781596
Target:  5'- -aGGGAGCCUCCuacucUCCGUGAgacGCGGGGa -3'
miRNA:   3'- ggCCCUCGGGGGc----AGGUGUU---UGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 8520 0.69 0.717144
Target:  5'- cCCaGGGcaaAGCCCCCGUCCuGCAcccuguACuaucuGGGg -3'
miRNA:   3'- -GG-CCC---UCGGGGGCAGG-UGUu-----UGu----CCC- -5'
29140 5' -58.9 NC_006146.1 + 9479 0.67 0.815904
Target:  5'- cCCGcGGGGCCacaCCCG-CCugGcACAGGc -3'
miRNA:   3'- -GGC-CCUCGG---GGGCaGGugUuUGUCCc -5'
29140 5' -58.9 NC_006146.1 + 13127 0.74 0.408283
Target:  5'- aCGGGGGCUCCCGggcCCACGAGgAGa- -3'
miRNA:   3'- gGCCCUCGGGGGCa--GGUGUUUgUCcc -5'
29140 5' -58.9 NC_006146.1 + 13275 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5'
29140 5' -58.9 NC_006146.1 + 13377 0.68 0.745327
Target:  5'- cUCGGGgcccagGGCCCCUaGUCCAgaGGACGGaGGa -3'
miRNA:   3'- -GGCCC------UCGGGGG-CAGGUg-UUUGUC-CC- -5'
29140 5' -58.9 NC_006146.1 + 14181 0.66 0.86982
Target:  5'- gCCaGGcuGGaCCCCCGgagCCugG-ACGGGGa -3'
miRNA:   3'- -GGcCC--UC-GGGGGCa--GGugUuUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 14662 0.67 0.815904
Target:  5'- aCCac-GGCaCCCCGUCCACGGcCgAGGGg -3'
miRNA:   3'- -GGcccUCG-GGGGCAGGUGUUuG-UCCC- -5'
29140 5' -58.9 NC_006146.1 + 16353 0.67 0.815074
Target:  5'- aCCGGcgccccaGAGCCCCUcggGUCCGCcucCAGGc -3'
miRNA:   3'- -GGCC-------CUCGGGGG---CAGGUGuuuGUCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.