Results 1 - 20 of 260 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 157785 | 1.11 | 0.001671 |
Target: 5'- cCCGGGAGCCCCCGUCCACAAACAGGGc -3' miRNA: 3'- -GGCCCUCGGGGGCAGGUGUUUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 56554 | 0.85 | 0.098317 |
Target: 5'- gCGGGccaGGCCCCCGUCCACcuccguCAGGGg -3' miRNA: 3'- gGCCC---UCGGGGGCAGGUGuuu---GUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 125511 | 0.84 | 0.103404 |
Target: 5'- cCCcGGAGCCCCC-UCCAgAAACAGGGa -3' miRNA: 3'- -GGcCCUCGGGGGcAGGUgUUUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 154246 | 0.8 | 0.178002 |
Target: 5'- cCUGGGAgGCCCCUGUCCGCG---AGGGa -3' miRNA: 3'- -GGCCCU-CGGGGGCAGGUGUuugUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 157324 | 0.8 | 0.178002 |
Target: 5'- cCUGGGAgGCCCCUGUCCGCG---AGGGa -3' miRNA: 3'- -GGCCCU-CGGGGGCAGGUGUuugUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 151168 | 0.8 | 0.178002 |
Target: 5'- cCUGGGAgGCCCCUGUCCGCG---AGGGa -3' miRNA: 3'- -GGCCCU-CGGGGGCAGGUGUuugUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 148090 | 0.8 | 0.178002 |
Target: 5'- cCUGGGAgGCCCCUGUCCGCG---AGGGa -3' miRNA: 3'- -GGCCCU-CGGGGGCAGGUGUuugUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 145012 | 0.8 | 0.178002 |
Target: 5'- cCUGGGAgGCCCCUGUCCGCG---AGGGa -3' miRNA: 3'- -GGCCCU-CGGGGGCAGGUGUuugUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 141934 | 0.8 | 0.178002 |
Target: 5'- cCUGGGAgGCCCCUGUCCGCG---AGGGa -3' miRNA: 3'- -GGCCCU-CGGGGGCAGGUGUuugUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 159285 | 0.79 | 0.210343 |
Target: 5'- cUCGGG-GCCCUCGcagUCgGCAAACAGGGg -3' miRNA: 3'- -GGCCCuCGGGGGC---AGgUGUUUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 139147 | 0.79 | 0.215356 |
Target: 5'- aCGGGGGCUCCCGUCC-Cc--CGGGGg -3' miRNA: 3'- gGCCCUCGGGGGCAGGuGuuuGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135751 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135566 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135380 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135473 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135844 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135937 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135659 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135287 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
|||||||
29140 | 5' | -58.9 | NC_006146.1 | + | 135194 | 0.78 | 0.24762 |
Target: 5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3' miRNA: 3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home