miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29140 5' -58.9 NC_006146.1 + 137331 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 137424 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 137517 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136402 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136309 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135287 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135194 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135380 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135659 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135566 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135473 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135751 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136216 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136123 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 136030 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135844 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135937 0.78 0.24762
Target:  5'- gCCGGGuGCCCCUggGUCCGCugccccgcuccGGCGGGGg -3'
miRNA:   3'- -GGCCCuCGGGGG--CAGGUGu----------UUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 167657 0.76 0.323294
Target:  5'- gCCGGGGGCCCgggggcgUGUCCcgcgacccgagggGCGAGCGGGGg -3'
miRNA:   3'- -GGCCCUCGGGg------GCAGG-------------UGUUUGUCCC- -5'
29140 5' -58.9 NC_006146.1 + 135713 0.76 0.338315
Target:  5'- gCCGGGuccGCUgCCCGUCCugGAGCucGGGg -3'
miRNA:   3'- -GGCCCu--CGG-GGGCAGGugUUUGu-CCC- -5'
29140 5' -58.9 NC_006146.1 + 31767 0.75 0.353085
Target:  5'- aCGGGAGCCCCCGUUCgGCccACAGc- -3'
miRNA:   3'- gGCCCUCGGGGGCAGG-UGuuUGUCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.